Click here to switch to the map view.

The map label for this gene is ygcN

Identifier: 218701250

GI number: 218701250

Start: 3052372

End: 3053643

Strand: Direct

Name: ygcN

Synonym: ECIAI39_2948

Alternate gene names: 218701250

Gene position: 3052372-3053643 (Clockwise)

Preceding gene: 218701249

Following gene: 218701251

Centisome position: 59.48

GC content: 55.11

Gene sequence:

>1272_bases
ATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGG
TTTATCCGTTTTGTTACTGGAACGAGCGGAGATTCCCGGCAGCAAAAATCTTTCCGGCGGGCGGCTATATACCCATGCAC
TCGCGGAACTCCTCCCTCAGTTTCACCTGACCGCGCCTCTTGAACGACGCATCACTCACGAAAGTCTTTCTCTGCTAACG
CCGGATGGCGCAACGACGTTTTCCAGCTTACAGCCCGGCGGTGAATCCTGGAGCGTATTACGTGCACGGTTCGATCCGTG
GCTGGTTGCCGAAGCCGAAAAAGAAGGTGTCGAATGCATCCCTGGTGCGACGGTGGATGCACTGTATGAAGAAAACGGCA
GAGTTTGCGGCGTTATTTGTGGTGACGATATTCTCCGCGCCCGTTATGTGGTGCTGGCAGAAGGTGCCAACAGCGTCCTG
GCTGAGCGTCACGGGTTAGTGACTCGTCCTGCTGGCGAAGTGATGGCGTTGGGGATCAAAGAAGTTCTTTCACTGGAAAC
ATCCGCTATTGAAGAACGTTTTCATCTGGAGAATAACGAAGGCGCAGCGTTGTTATTCAGCGGCGAAATCTGTGATGACT
TACCCGGCGGCGCATTTCTTTATACTAATCAACAAACGCTCTCGTTAGGGATTGTTTGCCCGCTCTCTTCACTTACGCAA
AGTCGTGTTCCGGCAAGCGAGCTGCTGGCTCGCTTTAAAACGCATCCGGCAGTGCGCCCGCTTATCAAAAACACGGAATC
ACTGGAGTATGGAGCGCATCTGGTGCCAGAAGGTGGCTTGCACAGTATGCCGGTGCAATACGCCGGTAACGGCTGGCTGC
TGCTGGGCGATGCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTAACTGGCGCGCAG
GCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTGCGCTTTATCATCACAACGTCGA
GCGCAGCCTGCTATGGGATGTTCTACAACGTTATCAGCATGTTCCGGCGCTTTTGCAACGCCCTGGATGGTACCGTGCGT
GGCCTGCGTTAATGCAGGATATTTCCCGCGATTTATGGGATCAGGGTGATAAACCTGTTCCGCCGCTGCGCCAGTTGCTC
TGGCGTCATTTACGTCGTCACGGCCTGTGGCATCTGGCGGGCGATGTTGTCAGGAGTATTCGATGTCTGTAG

Upstream 100 bases:

>100_bases
GTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTT
CTGGATATCTGGGGCATGAC

Downstream 100 bases:

>100_bases
CCCGTAATCTCTGGCGCGTTGCCGATGCGCCGCACATTGTTCCGGCTGACTCCGTTGAGCGCCAGACGGTACAACGGTTG
ATTAACGCTTGTCCGGCTGG

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLT
PDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVL
AERHGLVTRPAGEVMALGIKEVLSLETSAIEERFHLENNEGAALLFSGEICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQ
SRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGAQ
AAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLL
WRHLRRHGLWHLAGDVVRSIRCL

Sequences:

>Translated_423_residues
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLT
PDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVL
AERHGLVTRPAGEVMALGIKEVLSLETSAIEERFHLENNEGAALLFSGEICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQ
SRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGAQ
AAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLL
WRHLRRHGLWHLAGDVVRSIRCL
>Mature_423_residues
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLT
PDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVL
AERHGLVTRPAGEVMALGIKEVLSLETSAIEERFHLENNEGAALLFSGEICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQ
SRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGAQ
AAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLL
WRHLRRHGLWHLAGDVVRSIRCL

Specific function: Probably accepts electrons from ygcQ/ygcR and reduces a quinone [H]

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF-QO/fixC family [H]

Homologues:

Organism=Homo sapiens, GI119703746, Length=400, Percent_Identity=24.75, Blast_Score=86, Evalue=6e-17,
Organism=Escherichia coli, GI87082155, Length=423, Percent_Identity=97.1631205673759, Blast_Score=813, Evalue=0.0,
Organism=Escherichia coli, GI1787991, Length=428, Percent_Identity=42.0560747663551, Blast_Score=341, Evalue=5e-95,
Organism=Escherichia coli, GI1786227, Length=428, Percent_Identity=41.1214953271028, Blast_Score=332, Evalue=2e-92,
Organism=Caenorhabditis elegans, GI25144720, Length=366, Percent_Identity=27.0491803278689, Blast_Score=101, Evalue=9e-22,
Organism=Saccharomyces cerevisiae, GI6324932, Length=367, Percent_Identity=26.4305177111717, Blast_Score=86, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24652256, Length=409, Percent_Identity=25.6723716381418, Blast_Score=96, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.5.5.-

Molecular weight: Translated: 46296; Mature: 46296

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQ
CCCCCCEEEEECCCHHHHHHHHHHHCCHHEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHH
FHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECI
HCCCCCHHHHHHHHHHHEECCCCCCHHHCCCCCCCCHHHHHHCCCCEEEEECCCCCCEEC
PGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEVMALGIK
CCCHHHHHHHCCCCEEEEEECCHHHHHEEEEEECCCHHHHHHHCCCEECCCHHHHHHHHH
EVLSLETSAIEERFHLENNEGAALLFSGEICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQ
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCCEEEEEEECCHHHHHH
SRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALR
HCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCEECCCCCCCCCCEEECCCCEEEEHHHHH
SCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQH
HHHHCCCEEECCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
VPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLLWRHLRRHGLWHLAGDVVRSI
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
RCL
CCC
>Mature Secondary Structure
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQ
CCCCCCEEEEECCCHHHHHHHHHHHCCHHEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHH
FHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECI
HCCCCCHHHHHHHHHHHEECCCCCCHHHCCCCCCCCHHHHHHCCCCEEEEECCCCCCEEC
PGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEVMALGIK
CCCHHHHHHHCCCCEEEEEECCHHHHHEEEEEECCCHHHHHHHCCCEECCCHHHHHHHHH
EVLSLETSAIEERFHLENNEGAALLFSGEICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQ
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCCEEEEEEECCHHHHHH
SRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALR
HCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCEECCCCCCCCCCEEECCCCEEEEHHHHH
SCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQH
HHHHCCCEEECCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
VPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLLWRHLRRHGLWHLAGDVVRSI
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
RCL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]