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The map label for this gene is ydeL [H]

Identifier: 218701166

GI number: 218701166

Start: 2968066

End: 2969400

Strand: Reverse

Name: ydeL [H]

Synonym: ECIAI39_2861

Alternate gene names: 218701166

Gene position: 2969400-2968066 (Counterclockwise)

Preceding gene: 218701179

Following gene: 218701164

Centisome position: 57.86

GC content: 52.13

Gene sequence:

>1335_bases
ATGCCGCGCTATCAGGATATCGCCCGTCAGTTAAAAACGGCTATTGAGCAAGGGGAACTGAAACCCGGCGCAAGGCTGCC
TTCAAGTCGTACCTGGTCGCAGGAGCTGGGGGTGTCTCGATCCACTGTCGAAAATGCGTATGCTGAGCTGGTGGCGCAAG
GATGGCTGATCAGGCGGGGACAGGCTGGCACATTTGTCAGTGAGCGGATATATCCGCAACAATCTACTGTAAAAGTTGTA
GCTTTTGCCGGTGAAAGTCAGCAACCGTTGCCATTTCAAATGGGATTACCCGCACTCGATCTCTTTCCGCGAGAGCTGTG
GGCGCGGGTGATGGGGCGTCGCCTTCGTACCCAGACGCGCTTTGATTTGGCGTTAGGCGATGTTTGCGGTGAGGTGGCGT
TGCGCGAGGCAATAGTTGATTACTTACGCGTTTCACGTGGGATTGATTGTCAGCCAGAGCAGGTCTTTATCACTCACGGT
TATGCGGCCTCAATAGCTTTAATTCTGCACGCGCTGGCGAAACCGGGAAACGGGATGTGGATAGAAGATCCCGGCTTTCC
ACTGATTCGCCCGATTGTCACTCGCCATGATGTGGAAATTTTGCCTGTGCCGGTTGATGACAATGGACTGGATATCACAA
GCGGAATACAAAATTATCCTAATGCGCGTTTTGCCCTGATAACACCAGCACACCAAAGTCCGCTGGGTGTGGCGCTCTCT
TTAGCGCGCAGGCATCAGATACTGGAATGGGCAGATCGTAGTCAGGCATGGATTATTGAAGATGATTATGACAGTGAGTT
TCGCTATCACGGTAAGCCGTTACCGGCGTTAAAAAGTCTCGACGCACCGCAGCGGGTAATTTATGCCGGAACATTCAGCA
AAGCGCTATTTCCTGCATTGCGCTGTGCGTGGCTGGTGGTGCCGGTGAAGCAAATTGCACAATTCCGCCACCAGGCGTCA
CTGGCTCCATGTGCGGTACCTGTTCTATGGCAGAACACACTGGCAGACTTTCTTCGCGAGGGGCATTTCTGGCGATATCT
GAAGAAAATGCGTCAGCATTATGCTCAACGTCGGCAATGGATTGAGCAAGCGTTGACGCAGCAAGGATTTCAGGTTGTGC
CGCAGAAAGGTGGTATCCAGATGGTGATCAGAATGATAGGCGATGATATTGCCCATGCGCGTAAAGCCAATGCTGCAGGC
CTTGCGGTGCAGGCACTTAGCGACTGGCGTATCCGTTCAAGTGGGGAAGGTGGATTACTGCTCTCGTTTACTAATATCGT
TAACGAAGGTATGGCGCGACAGGTAGCACAACAATTACGTAAAGCCTTAAGCTAA

Upstream 100 bases:

>100_bases
GTAATGTAGTCATACAGTTTCTCCTCTTATTAACGCCCGCAATGTAGCACTATAATGGACTGTTAAAGAGAGCCATAAAT
TACCTAAAAAAGCAGACCAT

Downstream 100 bases:

>100_bases
AAAACCCCGAAGCCAGGCTTCGGGGTCAAAGACGCGTATTTATTATCATTATTGCACTACGATTTGCGCATGCTTAACAG
TGCGCCGATAAAAATACCAA

Product: bifunctional aminotransaminase/GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MPRYQDIARQLKTAIEQGELKPGARLPSSRTWSQELGVSRSTVENAYAELVAQGWLIRRGQAGTFVSERIYPQQSTVKVV
AFAGESQQPLPFQMGLPALDLFPRELWARVMGRRLRTQTRFDLALGDVCGEVALREAIVDYLRVSRGIDCQPEQVFITHG
YAASIALILHALAKPGNGMWIEDPGFPLIRPIVTRHDVEILPVPVDDNGLDITSGIQNYPNARFALITPAHQSPLGVALS
LARRHQILEWADRSQAWIIEDDYDSEFRYHGKPLPALKSLDAPQRVIYAGTFSKALFPALRCAWLVVPVKQIAQFRHQAS
LAPCAVPVLWQNTLADFLREGHFWRYLKKMRQHYAQRRQWIEQALTQQGFQVVPQKGGIQMVIRMIGDDIAHARKANAAG
LAVQALSDWRIRSSGEGGLLLSFTNIVNEGMARQVAQQLRKALS

Sequences:

>Translated_444_residues
MPRYQDIARQLKTAIEQGELKPGARLPSSRTWSQELGVSRSTVENAYAELVAQGWLIRRGQAGTFVSERIYPQQSTVKVV
AFAGESQQPLPFQMGLPALDLFPRELWARVMGRRLRTQTRFDLALGDVCGEVALREAIVDYLRVSRGIDCQPEQVFITHG
YAASIALILHALAKPGNGMWIEDPGFPLIRPIVTRHDVEILPVPVDDNGLDITSGIQNYPNARFALITPAHQSPLGVALS
LARRHQILEWADRSQAWIIEDDYDSEFRYHGKPLPALKSLDAPQRVIYAGTFSKALFPALRCAWLVVPVKQIAQFRHQAS
LAPCAVPVLWQNTLADFLREGHFWRYLKKMRQHYAQRRQWIEQALTQQGFQVVPQKGGIQMVIRMIGDDIAHARKANAAG
LAVQALSDWRIRSSGEGGLLLSFTNIVNEGMARQVAQQLRKALS
>Mature_443_residues
PRYQDIARQLKTAIEQGELKPGARLPSSRTWSQELGVSRSTVENAYAELVAQGWLIRRGQAGTFVSERIYPQQSTVKVVA
FAGESQQPLPFQMGLPALDLFPRELWARVMGRRLRTQTRFDLALGDVCGEVALREAIVDYLRVSRGIDCQPEQVFITHGY
AASIALILHALAKPGNGMWIEDPGFPLIRPIVTRHDVEILPVPVDDNGLDITSGIQNYPNARFALITPAHQSPLGVALSL
ARRHQILEWADRSQAWIIEDDYDSEFRYHGKPLPALKSLDAPQRVIYAGTFSKALFPALRCAWLVVPVKQIAQFRHQASL
APCAVPVLWQNTLADFLREGHFWRYLKKMRQHYAQRRQWIEQALTQQGFQVVPQKGGIQMVIRMIGDDIAHARKANAAGL
AVQALSDWRIRSSGEGGLLLSFTNIVNEGMARQVAQQLRKALS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=388, Percent_Identity=29.3814432989691, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1790797, Length=381, Percent_Identity=29.9212598425197, Blast_Score=131, Evalue=9e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 49819; Mature: 49688

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRYQDIARQLKTAIEQGELKPGARLPSSRTWSQELGVSRSTVENAYAELVAQGWLIRRG
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCHHEECC
QAGTFVSERIYPQQSTVKVVAFAGESQQPLPFQMGLPALDLFPRELWARVMGRRLRTQTR
CCCCHHHHHCCCCCCCEEEEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
FDLALGDVCGEVALREAIVDYLRVSRGIDCQPEQVFITHGYAASIALILHALAKPGNGMW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCE
IEDPGFPLIRPIVTRHDVEILPVPVDDNGLDITSGIQNYPNARFALITPAHQSPLGVALS
EECCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHH
LARRHQILEWADRSQAWIIEDDYDSEFRYHGKPLPALKSLDAPQRVIYAGTFSKALFPAL
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCEEEECCHHHHHHHHH
RCAWLVVPVKQIAQFRHQASLAPCAVPVLWQNTLADFLREGHFWRYLKKMRQHYAQRRQW
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IEQALTQQGFQVVPQKGGIQMVIRMIGDDIAHARKANAAGLAVQALSDWRIRSSGEGGLL
HHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCCCCEE
LSFTNIVNEGMARQVAQQLRKALS
EEHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PRYQDIARQLKTAIEQGELKPGARLPSSRTWSQELGVSRSTVENAYAELVAQGWLIRRG
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCHHEECC
QAGTFVSERIYPQQSTVKVVAFAGESQQPLPFQMGLPALDLFPRELWARVMGRRLRTQTR
CCCCHHHHHCCCCCCCEEEEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
FDLALGDVCGEVALREAIVDYLRVSRGIDCQPEQVFITHGYAASIALILHALAKPGNGMW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCE
IEDPGFPLIRPIVTRHDVEILPVPVDDNGLDITSGIQNYPNARFALITPAHQSPLGVALS
EECCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHH
LARRHQILEWADRSQAWIIEDDYDSEFRYHGKPLPALKSLDAPQRVIYAGTFSKALFPAL
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCEEEECCHHHHHHHHH
RCAWLVVPVKQIAQFRHQASLAPCAVPVLWQNTLADFLREGHFWRYLKKMRQHYAQRRQW
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IEQALTQQGFQVVPQKGGIQMVIRMIGDDIAHARKANAAGLAVQALSDWRIRSSGEGGLL
HHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCCCCEE
LSFTNIVNEGMARQVAQQLRKALS
EEHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]