| Definition | Escherichia coli IAI39 chromosome, complete genome. |
|---|---|
| Accession | NC_011750 |
| Length | 5,132,068 |
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The map label for this gene is ygaQ [H]
Identifier: 218701149
GI number: 218701149
Start: 2952498
End: 2954750
Strand: Direct
Name: ygaQ [H]
Synonym: ECIAI39_2844
Alternate gene names: 218701149
Gene position: 2952498-2954750 (Clockwise)
Preceding gene: 218701134
Following gene: 218701150
Centisome position: 57.53
GC content: 37.86
Gene sequence:
>2253_bases ATGTTTTCTATAAAACCAGGACCAAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGA TCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATGCTTGTGGAGTTTATCCTCAGA ATTTAAAAGACAGAGAAATTATATCAACTTTTCACGCAGAAAAAGTCATTAATGATCTGTTAAAAAACGATTATAAAATT TCCCTTTCTTCAGATACAACTTACCGAGAGCTGAATAAAGCTGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGA AGGGAAAACATGGGTTTATCAACGAGATACAATGGTTGAAAGAGGTGATAACAGCAGCGTTCATCAGTATGGTCCAGCTG AACATTTCACTCACATTATATCTGACAAACCATCCCCAAAAGATAAGTATGTTGCATATGCTATTAACATTCCTGACTAT GAGCTGGCAGCCGATGTATATAATATTAACGTGACGTCACCTTCCGGACAGCAAGAAACATTTAAAATACTAATCAATCC AGAACATCTACGGCAAACACTTGAGCGTAAATCTCTTACTGCTGTTCAGAAATCACAATGTGAAATCATCACCCCCAAAA AACCTGGCGAAGCGATTCTTCATGCTTTTAATGCCACCTACCAGCAAATCAGGGAAAATATGTCTGAGTTTGCACGTTCC CATTATGGGTATATACAAATTCCTCCAGTGACAACTTTCCGCGCCGACGGACCAGAAACTCCCGAAGAAGAAAAAGGTTA CTGGTTTCACGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAGATTTGCAGGATTTTATCGCATTGG TTAAAGATGCTAAAAAATTTGGTATCGATATCATTCCTGATTATACCTTTAACTTTATGGGAATTGGGGGTAGTGGTAAA AATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAAGTGGTATCCCTGGCTATTGGCA AGGTCAGGTTTTGATTCCATTTACTATAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCA CTGCAAAAGACTTTGAAACAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTAAAAGAAAAGCGT TTAAATGGAATGCCTAAAACAACCCCCAAAAGTGACCAGGTTATTATGTTGCAAAATCAATACGTTCGTGAAATGCGAAA ATATGGCGTACGAGGTTTACGTTACGATGCAGCAAAACACTCAAAACATGAACAAATAGAAAGGTCAATAACTCCACCGC TTACAATTTATAATGAGCGATTACACAATACTAACTTATTTAACCCAATATATCATGAAAAAGCCGTTATGAATTACATG GAATATCTGGTAACTTGTCAGTTGGATGAAGAACAAATGTCATCGCTGCTTTATGAAAGAGATGATTTAAGCGCCATTGA TTTTTCATTGCTCATGAAGACGATAAAAGCCTTTTCATTTGGTGGCGATCTCCAAACCCTTGCATCAAAACCGGGTTCAA CAATCTCAAGCATCCCGTCAAAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGCAATCTTTTCAAT GACTTTCTATTTAACCATCAACAAGATGAACAATTAGCAATGGCATATATGGCCGCTCTCCCGTTCAGCAGGCCTTTAGT TTACTGGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGGGTCGACGCGTGTCGGCGGTGAGGCGT GGCTTAATAAAGGTTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAGCAGGAATATGG AGCGCATTTGAGGGTGTATTTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCC TCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTACCTGGCCTAACAAATTGCAACCTGGAATAT ATAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGCATTTATG CTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACTGGAGAACCGCCGAACTA TCTCTATTTGTAA
Upstream 100 bases:
>100_bases GATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACACCTTATTACTCT ACCATTAGAGGAACTTTATT
Downstream 100 bases:
>100_bases TTTAATGTTATATCTGCCCCGCTAAAACGGGGCAGATAATATGTTTAGTTTACTAACGGTCATTTTGCAGTGAAGCCATT TACCGTTTTTTATCGACCAG
Product: putative alpha-amylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 750; Mature: 750
Protein sequence:
>750_residues MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINACGVYPQNLKDREIISTFHAEKVINDLLKNDYKI SLSSDTTYRELNKAAQRSITAPDRIGEGKTWVYQRDTMVERGDNSSVHQYGPAEHFTHIISDKPSPKDKYVAYAINIPDY ELAADVYNINVTSPSGQQETFKILINPEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARS HYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGK NDLDYPSADIRAKISKDIESGIPGYWQGQVLIPFTIDPVTKERKQIHPEDIHLTAKDFETSKDNISKDEWENLHALKEKR LNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLTIYNERLHNTNLFNPIYHEKAVMNYM EYLVTCQLDEEQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPSKRRILININHDFPNNGNLFN DFLFNHQQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEAWLNKGCSTYQQLYNEFHALYIDKAGIW SAFEGVFATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKAFM LRGGTLNINIPGRSALLLGKTGEPPNYLYL
Sequences:
>Translated_750_residues MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINACGVYPQNLKDREIISTFHAEKVINDLLKNDYKI SLSSDTTYRELNKAAQRSITAPDRIGEGKTWVYQRDTMVERGDNSSVHQYGPAEHFTHIISDKPSPKDKYVAYAINIPDY ELAADVYNINVTSPSGQQETFKILINPEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARS HYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGK NDLDYPSADIRAKISKDIESGIPGYWQGQVLIPFTIDPVTKERKQIHPEDIHLTAKDFETSKDNISKDEWENLHALKEKR LNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLTIYNERLHNTNLFNPIYHEKAVMNYM EYLVTCQLDEEQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPSKRRILININHDFPNNGNLFN DFLFNHQQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEAWLNKGCSTYQQLYNEFHALYIDKAGIW SAFEGVFATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKAFM LRGGTLNINIPGRSALLLGKTGEPPNYLYL >Mature_750_residues MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINACGVYPQNLKDREIISTFHAEKVINDLLKNDYKI SLSSDTTYRELNKAAQRSITAPDRIGEGKTWVYQRDTMVERGDNSSVHQYGPAEHFTHIISDKPSPKDKYVAYAINIPDY ELAADVYNINVTSPSGQQETFKILINPEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARS HYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGK NDLDYPSADIRAKISKDIESGIPGYWQGQVLIPFTIDPVTKERKQIHPEDIHLTAKDFETSKDNISKDEWENLHALKEKR LNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLTIYNERLHNTNLFNPIYHEKAVMNYM EYLVTCQLDEEQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPSKRRILININHDFPNNGNLFN DFLFNHQQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEAWLNKGCSTYQQLYNEFHALYIDKAGIW SAFEGVFATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKAFM LRGGTLNINIPGRSALLLGKTGEPPNYLYL
Specific function: Unknown
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006048 - InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C [H]
EC number: NA
Molecular weight: Translated: 85129; Mature: 85129
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINACGVYPQNLKDREI CCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH ISTFHAEKVINDLLKNDYKISLSSDTTYRELNKAAQRSITAPDRIGEGKTWVYQRDTMVE HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCHHCCCCCEEEEECCHHHC RGDNSSVHQYGPAEHFTHIISDKPSPKDKYVAYAINIPDYELAADVYNINVTSPSGQQET CCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHEEEEEEEEECCCCCCCCE FKILINPEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARS EEEEECHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH HYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKF CCCEEECCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHC GIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIESGIPGYWQGQVLIPFTIDPVT CCEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCH KERKQIHPEDIHLTAKDFETSKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQ HHHHHCCCCCEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHH YVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLTIYNERLHNTNLFNPIYHEKAVMNYM HHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCHHHHHHHHHHHH EYLVTCQLDEEQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPS HHHHEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHCCC KRRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEI CCEEEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH KNYDGSTRVGGEAWLNKGCSTYQQLYNEFHALYIDKAGIWSAFEGVFATKNVLAFSRGDS HCCCCCCCCCHHHHHHCCHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHCCEEEEECCCE VNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKAFM EECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCEEECCCCCEEE LRGGTLNINIPGRSALLLGKTGEPPNYLYL EECCEEEEEECCCCEEEEECCCCCCCEECC >Mature Secondary Structure MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINACGVYPQNLKDREI CCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH ISTFHAEKVINDLLKNDYKISLSSDTTYRELNKAAQRSITAPDRIGEGKTWVYQRDTMVE HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCHHCCCCCEEEEECCHHHC RGDNSSVHQYGPAEHFTHIISDKPSPKDKYVAYAINIPDYELAADVYNINVTSPSGQQET CCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHEEEEEEEEECCCCCCCCE FKILINPEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARS EEEEECHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH HYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKF CCCEEECCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHC GIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIESGIPGYWQGQVLIPFTIDPVT CCEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCH KERKQIHPEDIHLTAKDFETSKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQ HHHHHCCCCCEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHH YVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLTIYNERLHNTNLFNPIYHEKAVMNYM HHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCHHHHHHHHHHHH EYLVTCQLDEEQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPS HHHHEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHCCC KRRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEI CCEEEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH KNYDGSTRVGGEAWLNKGCSTYQQLYNEFHALYIDKAGIWSAFEGVFATKNVLAFSRGDS HCCCCCCCCCHHHHHHCCHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHCCEEEEECCCE VNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKAFM EECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCEEECCCCCEEE LRGGTLNINIPGRSALLLGKTGEPPNYLYL EECCEEEEEECCCCEEEEECCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]