Click here to switch to the map view.

The map label for this gene is csgC

Identifier: 218700454

GI number: 218700454

Start: 2162211

End: 2162543

Strand: Reverse

Name: csgC

Synonym: ECIAI39_2120

Alternate gene names: 218700454

Gene position: 2162543-2162211 (Counterclockwise)

Preceding gene: 218700455

Following gene: 218700453

Centisome position: 42.14

GC content: 43.24

Gene sequence:

>333_bases
ATGAATGCGTTATTACTCCTTGCGGCACTTTCCAGTCAGATAACCTTTAATACGACCCAGCAAGGGGATATGTACACCAT
TATTCCTGAAGTCACTCTTACTCAATCTTGTCTGTGCAGAGTACAAATATTGTCCCTGCGCGAAGGCAGTTCAGGGCAAA
GTCAGACGAAGCAAGAAAAGACCCTCTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCC
CCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTC
AGAAAAGTCTTAA

Upstream 100 bases:

>100_bases
CAGGTTGGCTTTGGTAACAACGCGACCGCTCATCAGTACTAATACATCCTCTGTATTAAAGAAACAGGGCGCAAGCCCTG
TTTTTTTTCGGGAGAAGAAT

Downstream 100 bases:

>100_bases
TTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGGATCAGCCAACCTGAAAGTATGGATAACA
CAACCCTCAAGGATGACTAA

Product: putative autoagglutination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MNALLLLAALSSQITFNTTQQGDMYTIIPEVTLTQSCLCRVQILSLREGSSGQSQTKQEKTLSLPANQPIALTKLSLNIS
PDDRVKIVVTVSDGQSLHLSQQWPPSSEKS

Sequences:

>Translated_110_residues
MNALLLLAALSSQITFNTTQQGDMYTIIPEVTLTQSCLCRVQILSLREGSSGQSQTKQEKTLSLPANQPIALTKLSLNIS
PDDRVKIVVTVSDGQSLHLSQQWPPSSEKS
>Mature_110_residues
MNALLLLAALSSQITFNTTQQGDMYTIIPEVTLTQSCLCRVQILSLREGSSGQSQTKQEKTLSLPANQPIALTKLSLNIS
PDDRVKIVVTVSDGQSLHLSQQWPPSSEKS

Specific function: Plays a role in the extracellular assembly of CsgA into thin aggregative fimbriae (Tafi) fibers. Assembly may also require CsgE. Tafi are thought to be assembled via an extracellular nucleation-precipitation (ENP) pathway, and possibly also via an intrace

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsgC/AgfC family

Homologues:

Organism=Escherichia coli, GI1787280, Length=110, Percent_Identity=98.1818181818182, Blast_Score=215, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSGC_ECO45 (B7MII3)

Other databases:

- EMBL:   CU928161
- RefSeq:   YP_002390837.1
- EnsemblBacteria:   EBESCT00000138236
- GeneID:   7131970
- GenomeReviews:   CU928161_GR
- GeneTree:   EBGT00050000009280
- HOGENOM:   HBG416348
- ProtClustDB:   PRK10102
- BioCyc:   ECOL585035:ECS88_1055-MONOMER
- InterPro:   IPR014491
- PIRSF:   PIRSF018100

Pfam domain/function: PF10610 Tafi-CsgC

EC number: NA

Molecular weight: Translated: 11969; Mature: 11969

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALLLLAALSSQITFNTTQQGDMYTIIPEVTLTQSCLCRVQILSLREGSSGQSQTKQEK
CCCEEEEEECCCCEEEECCCCCCEEEEECCCCCCHHHHEEEEEEEECCCCCCCCCCCCCC
TLSLPANQPIALTKLSLNISPDDRVKIVVTVSDGQSLHLSQQWPPSSEKS
EEECCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MNALLLLAALSSQITFNTTQQGDMYTIIPEVTLTQSCLCRVQILSLREGSSGQSQTKQEK
CCCEEEEEECCCCEEEECCCCCCEEEEECCCCCCHHHHEEEEEEEECCCCCCCCCCCCCC
TLSLPANQPIALTKLSLNISPDDRVKIVVTVSDGQSLHLSQQWPPSSEKS
EEECCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA