Click here to switch to the map view.

The map label for this gene is ymfN [H]

Identifier: 218700350

GI number: 218700350

Start: 2060989

End: 2062650

Strand: Reverse

Name: ymfN [H]

Synonym: ECIAI39_2010

Alternate gene names: 218700350

Gene position: 2062650-2060989 (Counterclockwise)

Preceding gene: 218700351

Following gene: 218700349

Centisome position: 40.19

GC content: 52.11

Gene sequence:

>1662_bases
TTGACCGCCTGGAATAAGTACGCAGAAGACGTAAAAACGGGCAAAATTCCGGCCTGTAAACGGTTAAAACAGGCTGTTAA
ACGGTACTTTTCGGACCTTAAAAGCCCCCTTTACACGTTCGATCGTGAGGTTGTGGAGCGGTTTATTGCCTTTTCCAGGG
TGTGCCCGCACGTAAAAGGACCGATGCGTGGCAGACCCATTGAGCTGGAGCCGTGGCAGCAGTTCGCCTTTGCGTGCATC
CTCGGCTTTAAGGTTAAGGCCACCGGACGGCGCAAATACACGAGCGCCTTTATCGAAGTGCCGCGCAAAAATGCGAAATC
CACGACCGCCGCGATTCTGGCTAACTGGTTTCTGATTATGGAGAACGGTCAGCAGGATATCTACACCGCAGCGGTGAGCC
GTGACCAGGCGCGGATCGTCTTTGATGATGCGCGTCAGATGTGCCTTTTATCCCGACCGTTACGCAGGCGGGTGAATATT
CAGGCGCATAAGGTGATACACCCGAAAAGCAACAGCCTGTTAAAGCCGCTGGCAGCAAAAGCAGCAACCATCGAGGGGAC
AAACCCCAGTCTTTCTATCGTGGACGAATACCACCTACACCCCGATAACGGCGTTTATTCCGCGCTTGAGCTGGGGATGG
GCGCACGTCCCGAAGGGCTGTTATTTGCCATTACCACATCGGGCAGTAACGTCGTTTCAGCCTGTAAGCAGCACTATGAT
TATTGCTGCCAGATCCTGGACGGCGAAGAGGTCAACGATTCAATTTTTGTACTGATTTACGAACTGGACGACGAAAACGA
GGTTGATGATCCGGCGATGTGGATAAAGGCTAACCCTAACATCGATGTTTCCGTCGATCGTGAAAAACTGGCCTCAACCA
TCCAGAAAGCGCGGGGTATTCCGTCGCAGTGGGTGGAGATGATGACAAAGCGATTTAATATCTGGTGTCAGGGGACTACC
CCGTGGATGGGTAATGGTGCATGGGCTGAGTGTACCGGAACGTTCACGGAGGAAGATTTACACGGTCAGGAGTGTTACGC
GGGGCTGGACTTATCATCAACCAGCGATATTTCCAGCGTATGCTATGCCTTTCCGGTCGGTAAAAATATCATGCTGGTTT
CCCGTCATTATCTGCCGGAGTTCCAGCTACAGAACCCAGCCAATAAAAATCGCGCTGTCTATCGCCAGTGGGCTAAAGCG
GGCTGGATATGCACAACGCCTGGCGACTGCATTGATTACGACCGGATCAGAGATGACATCATGCAGGACGCCGAGAAATT
TAATATCAGGTTGGTGGGCTTCGATACGTGGAACGCCACGCACCTGAGAACGCAATTACAGGGGGCAGGCTTTGAGGTGG
AGCCGTTCCCGCAAACCTACCTCAGATTCAGTCCGGCGGCGAAATCGTTCGAAGTTTTTGTTAACCGCAGGGTGATTGTG
CATCGTGGCGATCCGGTGTTGTCCTGGTCGATGAGTAACGTCGTGATGCAGAGTGACGCGAACGCCAATATCAAGCCGAA
CAAGAAAAAATCACCGAACAAGATAGACCCGAGCGTAGCGGCACTGATGGCGTTTGGTACATTTCAGGCAGAGCATGAGG
ATTTTGCTTTTGATATAAGCGACAGCCACCGCCAGAAACTGGAAGAATTTAGCGGGGTGTAA

Upstream 100 bases:

>100_bases
TCCGACGCTGAAAGAGTGATGATAAAAATGGCCTCCTTGCTCGGTTTTGACCCGATAAGCCGCCGTAAAAATCCACCGGA
AACAGAAGAAGAGGACGAGC

Downstream 100 bases:

>100_bases
TGAGGTCAGCAGCATGACAGAAGCCGAAATACTGCGATTAATCCGCCGCGTCTCTGGAATCAACCAGCAGGCTGACGAAC
AGACCACGCAGCCGGACAGC

Product: putative phage terminase large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 553; Mature: 552

Protein sequence:

>553_residues
MTAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYTFDREVVERFIAFSRVCPHVKGPMRGRPIELEPWQQFAFACI
LGFKVKATGRRKYTSAFIEVPRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRRRVNI
QAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHYD
YCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTT
PWMGNGAWAECTGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKNIMLVSRHYLPEFQLQNPANKNRAVYRQWAKA
GWICTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRRVIV
HRGDPVLSWSMSNVVMQSDANANIKPNKKKSPNKIDPSVAALMAFGTFQAEHEDFAFDISDSHRQKLEEFSGV

Sequences:

>Translated_553_residues
MTAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYTFDREVVERFIAFSRVCPHVKGPMRGRPIELEPWQQFAFACI
LGFKVKATGRRKYTSAFIEVPRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRRRVNI
QAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHYD
YCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTT
PWMGNGAWAECTGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKNIMLVSRHYLPEFQLQNPANKNRAVYRQWAKA
GWICTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRRVIV
HRGDPVLSWSMSNVVMQSDANANIKPNKKKSPNKIDPSVAALMAFGTFQAEHEDFAFDISDSHRQKLEEFSGV
>Mature_552_residues
TAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYTFDREVVERFIAFSRVCPHVKGPMRGRPIELEPWQQFAFACIL
GFKVKATGRRKYTSAFIEVPRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRRRVNIQ
AHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHYDY
CCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTP
WMGNGAWAECTGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKNIMLVSRHYLPEFQLQNPANKNRAVYRQWAKAG
WICTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRRVIVH
RGDPVLSWSMSNVVMQSDANANIKPNKKKSPNKIDPSVAALMAFGTFQAEHEDFAFDISDSHRQKLEEFSGV

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 62532; Mature: 62401

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: PS00414 PROFILIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYTFDREVVERFIAFSRVCPHVKG
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVPRKNAKSTTAAILANWFLIM
CCCCCCCCCCHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHEEEEE
ENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAK
ECCCCCEEHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH
AATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHYD
HEEECCCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHH
YCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARGI
HHHHHCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCEEEEECHHHHHHHHHHHCCC
PSQWVEMMTKRFNIWCQGTTPWMGNGAWAECTGTFTEEDLHGQECYAGLDLSSTSDISSV
CHHHHHHHHHHCEEEECCCCCCCCCCCEEEEECCCCCCCCCCHHHEECCCCCCCCCHHHH
CYAFPVGKNIMLVSRHYLPEFQLQNPANKNRAVYRQWAKAGWICTTPGDCIDYDRIRDDI
HHHCCCCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHCCEEECCCCCCCCHHHHHHHH
MQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRRVIV
HHHHHHCEEEEEEECCCCCHHHHHHHCCCCEECCCCCHHHEEECCCCHHEEEEECCEEEE
HRGDPVLSWSMSNVVMQSDANANIKPNKKKSPNKIDPSVAALMAFGTFQAEHEDFAFDIS
ECCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECC
DSHRQKLEEFSGV
HHHHHHHHHHCCC
>Mature Secondary Structure 
TAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYTFDREVVERFIAFSRVCPHVKG
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVPRKNAKSTTAAILANWFLIM
CCCCCCCCCCHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHEEEEE
ENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAK
ECCCCCEEHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH
AATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHYD
HEEECCCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHH
YCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARGI
HHHHHCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCEEEEECHHHHHHHHHHHCCC
PSQWVEMMTKRFNIWCQGTTPWMGNGAWAECTGTFTEEDLHGQECYAGLDLSSTSDISSV
CHHHHHHHHHHCEEEECCCCCCCCCCCEEEEECCCCCCCCCCHHHEECCCCCCCCCHHHH
CYAFPVGKNIMLVSRHYLPEFQLQNPANKNRAVYRQWAKAGWICTTPGDCIDYDRIRDDI
HHHCCCCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHCCEEECCCCCCCCHHHHHHHH
MQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRRVIV
HHHHHHCEEEEEEECCCCCHHHHHHHCCCCEECCCCCHHHEEECCCCHHEEEEECCEEEE
HRGDPVLSWSMSNVVMQSDANANIKPNKKKSPNKIDPSVAALMAFGTFQAEHEDFAFDIS
ECCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECC
DSHRQKLEEFSGV
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]