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The map label for this gene is nohA

Identifier: 218700321

GI number: 218700321

Start: 2039567

End: 2040115

Strand: Reverse

Name: nohA

Synonym: ECIAI39_1979

Alternate gene names: 218700321

Gene position: 2040115-2039567 (Counterclockwise)

Preceding gene: 218700322

Following gene: 218700320

Centisome position: 39.75

GC content: 49.91

Gene sequence:

>549_bases
ATGAAGGTTAATAAAAAGAGGCTTGCCGAAATTTTCAACGTGGACCCGCGGACGATTGAACGCTGGCAGTCTCAGGGACT
CCCTTGCGCCTCCAAAGGTAGTAAGGGCATTGAATCTGTATTTGATACTGCCATGGCAATTCAGTGGTATGCGCAGAGGG
AAACTGATATCGAAAACGAAAAGCTCCGCAAAGAACTGGACGATTTGCGTGCGGCAGCGGAGTCAGATTTACAACCCGGC
ACCATTGACTATGAACGCTACCGGCTCACAAAAGCGCAGGCAGATGCGCAGGAACTGAAAAATGCCCGTGAAGACGGAGT
AGTGCTGGAAACTGAACTGTTTACCTTCATTCTGCAACGTGTGGCACAGGAGATTTCGGGGATACTTGTGCGTGTGCCGT
TGACATTACAGCGTAAATATCCGGACATTTCACCATCACACCTTGATGTGGTGAAAACTGAAATCGCGAAAGCCTCCAAT
GTTGCAGCTAAGGCCGGTGAAAACGTGGGCGGGTGGATCGATGATTTCAGACGCGCAGAAGGCAGCTAA

Upstream 100 bases:

>100_bases
TTTAATATTGCATCCGTAAAGGTCCGACATGAAAGTGTCCGAAAATGCCTTTTTCTGGCGTTTTCATGTCGGGCCTTGTA
TTTGATAATGGGTTGTTTTC

Downstream 100 bases:

>100_bases
TGCAGCCGGTGCGATAGCTACAGGGCTTTTATCTCTCATTATTCCTGTTCCACTGACGACAGTTCAGTGGGCCAATAAAC
ATTATTACCTTCCTAAAGAG

Product: terminase small subunit (Gp1)

Products: NA

Alternate protein names: Gp1

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MKVNKKRLAEIFNVDPRTIERWQSQGLPCASKGSKGIESVFDTAMAIQWYAQRETDIENEKLRKELDDLRAAAESDLQPG
TIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQRVAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASN
VAAKAGENVGGWIDDFRRAEGS

Sequences:

>Translated_182_residues
MKVNKKRLAEIFNVDPRTIERWQSQGLPCASKGSKGIESVFDTAMAIQWYAQRETDIENEKLRKELDDLRAAAESDLQPG
TIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQRVAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASN
VAAKAGENVGGWIDDFRRAEGS
>Mature_182_residues
MKVNKKRLAEIFNVDPRTIERWQSQGLPCASKGSKGIESVFDTAMAIQWYAQRETDIENEKLRKELDDLRAAAESDLQPG
TIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQRVAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASN
VAAKAGENVGGWIDDFRRAEGS

Specific function: Involved in the initiation of the phage DNA packaging into the prohead. Processes replicating concatemeric DNA into pieces of unit length with cohesive ends

COG id: COG4220

COG function: function code L; Phage DNA packaging protein, Nu1 subunit of terminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the terminase small subunit family

Homologues:

Organism=Escherichia coli, GI1786773, Length=181, Percent_Identity=51.3812154696133, Blast_Score=197, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TERS_ECOL6 (P68653)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_753477.1
- ProteinModelPortal:   P68653
- SMR:   P68653
- EnsemblBacteria:   EBESCT00000043384
- GeneID:   1035320
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c1568
- NMPDR:   fig|199310.1.peg.1520
- GeneTree:   EBGT00050000009383
- HOGENOM:   HBG466929
- OMA:   PVHLDAV
- ProtClustDB:   CLSK879976
- InterPro:   IPR009061
- InterPro:   IPR010906
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF07471 Phage_Nu1; SSF46955 Putativ_DNA_bind

EC number: NA

Molecular weight: Translated: 20507; Mature: 20507

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVNKKRLAEIFNVDPRTIERWQSQGLPCASKGSKGIESVFDTAMAIQWYAQRETDIENE
CCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
KLRKELDDLRAAAESDLQPGTIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQR
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHH
VAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASNVAAKAGENVGGWIDDFRRAE
HHHHHHHEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
GS
CC
>Mature Secondary Structure
MKVNKKRLAEIFNVDPRTIERWQSQGLPCASKGSKGIESVFDTAMAIQWYAQRETDIENE
CCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
KLRKELDDLRAAAESDLQPGTIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQR
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHH
VAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASNVAAKAGENVGGWIDDFRRAE
HHHHHHHEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
GS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157