Click here to switch to the map view.

The map label for this gene is ddpX

Identifier: 218700118

GI number: 218700118

Start: 1839637

End: 1840218

Strand: Reverse

Name: ddpX

Synonym: ECIAI39_1752

Alternate gene names: 218700118

Gene position: 1840218-1839637 (Counterclockwise)

Preceding gene: 218700119

Following gene: 218700117

Centisome position: 35.86

GC content: 52.58

Gene sequence:

>582_bases
ATGTCGGATACCACCGAACTGGTTGATTTAGCCGTGATCTTCCCTGATCTGGAGATCGAACTGAAATACGCCTGCGCTGA
TAACATCACAGGTAAAGCTATTTATCAGCAAGCGCGTTGTCTGTTACACAAGGATGCGATTACCGCGCTGGCGAAAAGTA
TCAGTATCGCCCAGCTGTCAGGCTTACAACTGGTGATTTACGATGCGTATCGCCCACAACAAGCACAGGCGATGTTGTGG
CAAGCCTGCCCAGACCCGCAATATGTTGTTGATGTGGCGGTCGGTTCTAATCACAGCCGTGGCACGGCGATCGACCTGAC
GCTTCGTGATGAGCACGGGAACATACTGGATATGGGTGCAGAGTTCGATGAAATGCACGAACGTTCCCATGCTTATCACC
CTTCCGTCCCGCCAGCCGCTCAGCGCAATCGGCTGTTGCTGAATGCGATTATGACTGGCGGTGGCTTTGTCGGTATCCCG
AGCGAATGGTGGCACTTCGAATTACCCCAGGCAGCGAGTTACCCACTACTCGCTGATCAATTCACCTGTTTTATATCCCC
TGGCACACAGCACGCCAGTTAA

Upstream 100 bases:

>100_bases
AATATAACTTTAAGCCAGCATTCTGGCGCTTATCCCGGCATGGCATGAGATCTGCATAAGCGGAAAGCGCAGCAATTTTT
GTCTTATACAGGAACCGTTT

Downstream 100 bases:

>100_bases
TCAGGAAACTGTCATGAAGAGATCGATTTTGTTTCGTCCTACATTGCTCGCGATCGTCCTTGCCACAACAATGCCGGTTG
CGCACGCCGCCGTACCGAAA

Product: D-alanyl-D-alanine dipeptidase

Products: NA

Alternate protein names: D-Ala-D-Ala dipeptidase [H]

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHKDAITALAKSISIAQLSGLQLVIYDAYRPQQAQAMLW
QACPDPQYVVDVAVGSNHSRGTAIDLTLRDEHGNILDMGAEFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGIP
SEWWHFELPQAASYPLLADQFTCFISPGTQHAS

Sequences:

>Translated_193_residues
MSDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHKDAITALAKSISIAQLSGLQLVIYDAYRPQQAQAMLW
QACPDPQYVVDVAVGSNHSRGTAIDLTLRDEHGNILDMGAEFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGIP
SEWWHFELPQAASYPLLADQFTCFISPGTQHAS
>Mature_192_residues
SDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHKDAITALAKSISIAQLSGLQLVIYDAYRPQQAQAMLWQ
ACPDPQYVVDVAVGSNHSRGTAIDLTLRDEHGNILDMGAEFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGIPS
EWWHFELPQAASYPLLADQFTCFISPGTQHAS

Specific function: Hydrolyzes D-Ala-D-Ala. May have a role in cell-wall turnover [H]

COG id: COG2173

COG function: function code M; D-alanyl-D-alanine dipeptidase

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15D family [H]

Homologues:

Organism=Escherichia coli, GI1787763, Length=193, Percent_Identity=97.4093264248705, Blast_Score=393, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR000755 [H]

Pfam domain/function: PF01427 Peptidase_M15 [H]

EC number: =3.4.13.22 [H]

Molecular weight: Translated: 21251; Mature: 21120

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHKDAITALAKSISIAQLS
CCCHHHEEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEC
GLQLVIYDAYRPQQAQAMLWQACPDPQYVVDVAVGSNHSRGTAIDLTLRDEHGNILDMGA
CCEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCEEECCC
EFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGIPSEWWHFELPQAASYPLLADQ
CHHHHHHHCCCCCCCCCCCHHCCEEEEEEECCCCCEEECCCCCCEEECCCCCCCCEECCC
FTCFISPGTQHAS
EEEEECCCCCCCC
>Mature Secondary Structure 
SDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHKDAITALAKSISIAQLS
CCHHHEEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEC
GLQLVIYDAYRPQQAQAMLWQACPDPQYVVDVAVGSNHSRGTAIDLTLRDEHGNILDMGA
CCEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCEEECCC
EFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGIPSEWWHFELPQAASYPLLADQ
CHHHHHHHCCCCCCCCCCCHHCCEEEEEEECCCCCEEECCCCCCEEECCCCCCCCEECCC
FTCFISPGTQHAS
EEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]