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The map label for this gene is cspI

Identifier: 218699878

GI number: 218699878

Start: 1574469

End: 1574681

Strand: Direct

Name: cspI

Synonym: ECIAI39_1505

Alternate gene names: 218699878

Gene position: 1574469-1574681 (Clockwise)

Preceding gene: 218699877

Following gene: 218699879

Centisome position: 30.68

GC content: 40.38

Gene sequence:

>213_bases
ATGTCTAACAAAATGACTGGTTTAGTGAAATGGTTTAACCCTGAAAAAGGTTTTGGTTTCATCACGCCGAAAGATGGCAG
CAAAGATGTGTTTGTCCATTTCTCAGCAATTCAGAGCAACGATTTCAAAACATTAACTGAGAATCAGGAAGTTGAATTTG
GTATTGAGAACGGACCTAAAGGTCCTGCCGCTGTTCATGTAGTGGCGCTTTGA

Upstream 100 bases:

>100_bases
ATTATTTGTACCTCTTGAGATTTCCTTGTTGGTTTTTCTCTCTGATATTTTTTTTCGGACCATTCTGCCCAAGGGCTAAT
TTCTTCAAAAGGTAATAATT

Downstream 100 bases:

>100_bases
GGTAGACAATATTACAAACCATATTCACTTTAGATGCCCGTGTTGTCATGGTTCCCAGTATAGAACATCATCTTTTGATG
TTTCTGACATGAATCCTTTC

Product: cold shock protein; Qin prophage

Products: NA

Alternate protein names: CPS-I

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKGPAAVHVVAL

Sequences:

>Translated_70_residues
MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKGPAAVHVVAL
>Mature_69_residues
SNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKGPAAVHVVAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=100, Blast_Score=144, Evalue=1e-36,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=78.5714285714286, Blast_Score=119, Evalue=6e-29,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=72.0588235294118, Blast_Score=107, Evalue=2e-25,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=70, Blast_Score=104, Evalue=1e-24,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=72.0588235294118, Blast_Score=102, Evalue=5e-24,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=73.134328358209, Blast_Score=100, Evalue=1e-23,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=50, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1787840, Length=67, Percent_Identity=47.7611940298507, Blast_Score=65, Evalue=7e-13,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=49.2537313432836, Blast_Score=65, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=49.1803278688525, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSPI_ECOL6 (P0A987)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_755059.1
- ProteinModelPortal:   P0A987
- SMR:   P0A987
- EnsemblBacteria:   EBESCT00000040249
- GeneID:   1038926
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c3177
- GeneTree:   EBGT00050000010462
- HOGENOM:   HBG717773
- OMA:   IQSNNFK
- ProtClustDB:   CLSK891754
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7684; Mature: 7553

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPK
CCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEECCCCCC
GPAAVHVVAL
CCCEEEEEEC
>Mature Secondary Structure 
SNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPK
CCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEECCCCCC
GPAAVHVVAL
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157