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The map label for this gene is ydgJ

Identifier: 218699809

GI number: 218699809

Start: 1502936

End: 1503976

Strand: Direct

Name: ydgJ

Synonym: ECIAI39_1433

Alternate gene names: 218699809

Gene position: 1502936-1503976 (Clockwise)

Preceding gene: 218699795

Following gene: 218699813

Centisome position: 29.29

GC content: 53.79

Gene sequence:

>1041_bases
ATGAGCGACAACATCCGTGTTGGGTTGATTGGGTATGGTTATGCGAGCAAAACCTTCCATGCGCCCCTGATTGCGGGCAC
GCCCGGGCTGGAACTGGCGGTAATCTCCAGCAGCGATGAAACAAAAGTAAAAGCCGACTGGCCAACGGTTGCGGTTGTCT
CTGAGCCGAAGCATCTGTTTAACGATCCCAACATAGACCTGATTGTCATTCCTACACCCAACGATACCCATTTCCCGTTA
GCCAAAGCGGCGCTTGAGGCGGGTAAACATGTGGTCGTTGATAAACCCTTTACCGTGACACTGTCACAAGCGCGAGAGCT
GGAAGCGCTGGCAAAAAGCCTGGGGCGTGTGCTGTCTGTATTCCATAACCGTCGCTGGGATAGCGATTTCCTGACGCTAA
AAGGTTTGCTCGCGGAAGGCGTACTGGGTGAAGTTGCTTACTTTGAGTCTCATTTTGACCGCTTCCGTCCGCAGGTGCGC
GATCGTTGGCGTGAACAGGGCGGTCCTGGCAGCGGTATCTGGTACGATTTAGCACCGCATCTTCTTGATCAGGCCATTAC
GCTATTTGGTTTACCGGTCAGCATGACGGTTGATTTGGCACAGTTACGGCCCGGAGCGCAGTCGACCGATTATTTCCACG
CCATCTTGTCCTATCCGCAGCGGCGAGTCATTTTACACGGCACCATGCTGGCAGCCGCTGAGTCAGCACGTTATATCGTG
CATGGATCCCGAGGCAGTTATGTGAAATATGGCCTCGATCCACAGGAAGAACGTCTGAAAAATGGCGAGCGTCTGCCGCA
GGAAGACTGGGCCTACGATATGCGTGATGGCGTACTTACCCGCGTGGAAGGTGAGGAACGTGTCGAAGAAACGCTGTTGA
CAGTACCAGGGAATTATCCGGCTTACTATGCGGCTATTCGTGATGCGTTAAATGGCGATGGTGAAAATCCGGTTCCGGCA
AGTCAGGCAATCCAGGTAATGGAGTTGATTGAGCTGGGCATCGAATCCGCCAAACATCGCGCGACGCTGTGCCTTGCGTG
A

Upstream 100 bases:

>100_bases
AGTTAAACAACATCCCTTATTGCTGGCAGGTTATTAAACTGTTGAGCGAGGGTAAAGGATAGTGTCAAATAGCCATCATA
CTTCAATGAGAGGCAATGAC

Downstream 100 bases:

>100_bases
AAAGAGGATGGTGCAATTAGCACCATCCATTTTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGC
GCTGAGGAAAGCCATTTCCA

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVKADWPTVAVVSEPKHLFNDPNIDLIVIPTPNDTHFPL
AKAALEAGKHVVVDKPFTVTLSQARELEALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVR
DRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HGSRGSYVKYGLDPQEERLKNGERLPQEDWAYDMRDGVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPA
SQAIQVMELIELGIESAKHRATLCLA

Sequences:

>Translated_346_residues
MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVKADWPTVAVVSEPKHLFNDPNIDLIVIPTPNDTHFPL
AKAALEAGKHVVVDKPFTVTLSQARELEALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVR
DRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HGSRGSYVKYGLDPQEERLKNGERLPQEDWAYDMRDGVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPA
SQAIQVMELIELGIESAKHRATLCLA
>Mature_345_residues
SDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVKADWPTVAVVSEPKHLFNDPNIDLIVIPTPNDTHFPLA
KAALEAGKHVVVDKPFTVTLSQARELEALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVRD
RWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIVH
GSRGSYVKYGLDPQEERLKNGERLPQEDWAYDMRDGVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPAS
QAIQVMELIELGIESAKHRATLCLA

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=346, Percent_Identity=98.8439306358381, Blast_Score=702, Evalue=0.0,
Organism=Escherichia coli, GI1789848, Length=346, Percent_Identity=36.4161849710983, Blast_Score=201, Evalue=6e-53,
Organism=Escherichia coli, GI1787574, Length=211, Percent_Identity=27.9620853080569, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6323975, Length=259, Percent_Identity=25.8687258687259, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38241; Mature: 38110

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVKADWPTVAVVSEPKHLF
CCCCEEEEEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCEEEECCCEEEEEECCHHHC
NDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELEALAKSLGRVLSV
CCCCEEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHH
FHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVRDRWREQGGPGSGIWYDLAPH
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHH
LLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HHHHHHHHHCCCHHHEEEHHHCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHCCCEEEE
HGSRGSYVKYGLDPQEERLKNGERLPQEDWAYDMRDGVLTRVEGEERVEETLLTVPGNYP
ECCCCCEEEECCCCHHHHHCCCCCCCHHHCCHHHHCCCEEECCCHHHHHHHEEECCCCCC
AYYAAIRDALNGDGENPVPASQAIQVMELIELGIESAKHRATLCLA
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure 
SDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVKADWPTVAVVSEPKHLF
CCCEEEEEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCEEEECCCEEEEEECCHHHC
NDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELEALAKSLGRVLSV
CCCCEEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHH
FHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVRDRWREQGGPGSGIWYDLAPH
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHH
LLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HHHHHHHHHCCCHHHEEEHHHCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHCCCEEEE
HGSRGSYVKYGLDPQEERLKNGERLPQEDWAYDMRDGVLTRVEGEERVEETLLTVPGNYP
ECCCCCEEEECCCCHHHHHCCCCCCCHHHCCHHHHCCCEEECCCHHHHHHHEEECCCCCC
AYYAAIRDALNGDGENPVPASQAIQVMELIELGIESAKHRATLCLA
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]