Click here to switch to the map view.

The map label for this gene is ydhQ

Identifier: 218699768

GI number: 218699768

Start: 1461121

End: 1462377

Strand: Direct

Name: ydhQ

Synonym: ECIAI39_1392

Alternate gene names: 218699768

Gene position: 1461121-1462377 (Clockwise)

Preceding gene: 218699765

Following gene: 218699770

Centisome position: 28.47

GC content: 51.39

Gene sequence:

>1257_bases
ATGGGATCTGATGCGAAAAACTTGATGAGCGACGGGAACGTGCAAATTGTTAAGACCGGCGAGGTCATTGGCGCGACGCA
ACTTACTGAAGGCGAGTTAATTGTTGAGGCTGGCGGAAGAGCCGAAAATACCGTGGTCACGGGGGCTGGCTGGTTGAAAG
TGGCAACCGGTGGGATCGCCAAATGCACACAGTACGGCAACAATGGCACGCTATCGGTCAGCGACGGTGCCATTGCCACA
GATATTGTTCAGTCCGAGGGAGGCGCAATTAGTCTCTCTACGCTCGCTACGGTTAATGGCCGCCATCCCGAAGGTGAATT
CAGCGTTGATAAAGGTTATGCCTGCGGTTTGTTGCTGGAAAATGGCGGTAACCTGCGTGTACTGGAAGGCCATCGCGCGG
AAAAAATTATTCTCGATCAAGAGGGTGGCTTGTTGGTCAATGGGACAACCTCAGCGGTCGTGGTAGATGAAGGTGGTGAA
TTGTTGGTGTATCCAGGTGGGGAAGCCAGCAATTGTGAGATTAATCAGGGCGGCGTTTTTATGCTGGCGGGCAAAGCCAA
TGATACGTTGCTTGCTGGTGGCACCATGAATAATCTCGGTGGTGAAGACTCTGACACTATTGTTGAGAATGGAGCCATCT
ATCGTCTGGGGACGGATGGTCTTCAGCTCTACAGTTCCGGTAAGACGCAAAACCTGTCCGTTAATGTGGGTGGTCGGGCT
GAAGTGCATGCTGGTACGCTGGAAAACGCGGTAATACAAGGTGGGACAGTGATCCTGTTGTCACCCACCAGCGCGGACGA
AAATTTTGTCGTAGAGGAAGATCGCGCACCGGTTGAACTGACCGGTAGTGTTGCATTACTGGACGGCGCTTCAATGATTA
TTGGCTATGGCGCAGATCTGCAACAATCAACGATTACTGTACAGCAGGGCGGTGTATTGATTCTCGACGGCAGTACGGTA
AAAGGTGACAGTGTCACTTTCAGTGTTGGTAACATCAATCTCAATGGCGGAAAACTGTGGCTAATCACTGGTGCGGCAAC
GCATGTGCAACTGAAAGTGAAACGCCTGCGCGGAGAGGGAGCGATTTGCCTGCAAACCAGTGCGAAAGAAATTTCACCTG
ACTTCATCAATGTGAAAGGGGAAGTTACTGGTGATATACACGTTGAGATAACAGATGCCAGTCGGCAAACTCTGTGTAAC
GCACTGAAACTACAGCCAGACGAAGACGGGATTGGCGCAACGCTCCAGCCTGCGTAA

Upstream 100 bases:

>100_bases
AGTTGTTTGCCACCATCTCAAATCTGTCGTGGATAAATCCTTCGTAGCCTTTACACTTAGGTAGCAATAAAGGCACACAG
ATGCAGCAAAGGAATAAATC

Downstream 100 bases:

>100_bases
AAACACAGGCGCAACCCGTGAAGGTTGCGCCTTGTCTTTATTAGCGGGATGCTCGTTGCAGAATGATAACTGACGGCAGA
CGTTGCAGGAACCGCATACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIAT
DIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGE
LLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRA
EVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTV
KGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCN
ALKLQPDEDGIGATLQPA

Sequences:

>Translated_418_residues
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIAT
DIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGE
LLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRA
EVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTV
KGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCN
ALKLQPDEDGIGATLQPA
>Mature_417_residues
GSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATD
IVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGEL
LVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAE
VHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVK
GDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNA
LKLQPDEDGIGATLQPA

Specific function: Unknown

COG id: COG3468

COG function: function code MU; Type V secretory pathway, adhesin AidA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787954, Length=418, Percent_Identity=98.8038277511962, Blast_Score=814, Evalue=0.0,
Organism=Escherichia coli, GI87082145, Length=374, Percent_Identity=28.6096256684492, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI48994897, Length=381, Percent_Identity=30.4461942257218, Blast_Score=95, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012332
- InterPro:   IPR011050
- InterPro:   IPR004899 [H]

Pfam domain/function: PF03212 Pertactin [H]

EC number: NA

Molecular weight: Translated: 42789; Mature: 42658

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIA
CCCCHHHHHCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCCEEEECCCEEEEECCCCE
KCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLE
EHEECCCCCEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCEEECCCCEEEEEEE
NGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVF
CCCCEEEEECCCCEEEEEECCCCEEEECCCEEEEEECCCCEEEECCCCCCCCEECCCCEE
MLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRA
EEECCCCCEEEECCCCCCCCCCCCCEEEECCEEEEECCCCEEEEECCCCEEEEEEECCCE
EVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADL
EEECCCCCCEEECCCEEEEECCCCCCCCEEEECCCCCEEEECCEEEECCCEEEEEECCCC
QQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEG
CCEEEEEECCCEEEECCCEECCCEEEEEEEEEEECCCEEEEEECCCEEEEEEEEEECCCC
AICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
EEEEECCCCCCCCCEEEEEEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCEEECCC
>Mature Secondary Structure 
GSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIA
CCCHHHHHCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCCEEEECCCEEEEECCCCE
KCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLE
EHEECCCCCEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCEEECCCCEEEEEEE
NGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVF
CCCCEEEEECCCCEEEEEECCCCEEEECCCEEEEEECCCCEEEECCCCCCCCEECCCCEE
MLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRA
EEECCCCCEEEECCCCCCCCCCCCCEEEECCEEEEECCCCEEEEECCCCEEEEEEECCCE
EVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADL
EEECCCCCCEEECCCEEEEECCCCCCCCEEEECCCCCEEEECCEEEECCCEEEEEECCCC
QQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEG
CCEEEEEECCCEEEECCCEECCCEEEEEEEEEEECCCEEEEEECCCEEEEEEEEEECCCC
AICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
EEEEECCCCCCCCCEEEEEEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]