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The map label for this gene is yedQ

Identifier: 218699484

GI number: 218699484

Start: 1178720

End: 1180414

Strand: Direct

Name: yedQ

Synonym: ECIAI39_1101

Alternate gene names: 218699484

Gene position: 1178720-1180414 (Clockwise)

Preceding gene: 218699483

Following gene: 218699487

Centisome position: 22.97

GC content: 51.8

Gene sequence:

>1695_bases
GTGCAGCACGAGACAAAAATGGAAAACCAGAGCTGGTTGAAAAAACTCGCACGCCGCCTGGGGCCTGGTCATGTCGTTAA
TCTCTGCTTTATTGTGGTATTGCTTTTTTCTACCTTGCTCACCTGGCGTGAAGTGGTGGTGCTGGAAGATGCCTATATCT
CCAGCCAGCGTAATCATCTGGAAAACGTAGCCAACGCGCTCGATAAGCATTTGCAGTATAACGTCGACAAACTGATCTTT
TTGCGTAATGGCATGCGCGAAGCTCTCGTGGCGCCACTGGATTTCATCTCTCTGCGTAATGCCGTAACCGAGTTCGAACA
GCATCGCGACGAGCACGCCTGGCAAATCGAACTCAACCGACGGCGCACCCTGCCAGTCAATGGCGTATCGGATGCATTAG
TCAGCGAGGGGAATCTCCTGTCTCGCGAAAATGAAAGCCTCGACAATGAAATTACCGCTGCACTGGAAGTTGGTTACTTG
CTGCGACTGGCGCACAACTCCTCGTCGATGGTTGAACAGGCGGTGTATGTCTCGCGTGCTGGATTTTACGTTTCGACGCT
GCCGACCTTGTTTACGCGCAATGTACCAACGCGTTATTACGGCTATGTCACCCAACCCTGGTTTATCGGCCATTCACAAC
GAGAAAATCGTCACCGCGCGGTACGCTGGTTCACTTCGCAACCGGAACACGCCAGCAATACTGAACCGCAGGTTACCGTC
AGTGTTCCGGTAGACAGTAATAACTACTGGTATGGCGTGCTGGGGATGAGTATTCCCGTGCGTACTATGCAGCAATTTTT
AAGAAACGCCATCGATAAAAACCTCGATGGTGAGTATCAGCTCTATGACAGTAAGCTGAGATTTTTGACCTCTTCAAATC
CTGACCATCCAACAGGGAATATTTTTGATCCTCGTGAACTGGCCTTGCTGGCGCAGGCAATGGAACATGACACGCGGGGC
GGCATTCGTATGGACAGTCGCTATGTTAGCTGGGAACGTCTGGACCATTTCGACGGTGTGCTGGTGCGCGTCCATACGCT
AAGCGAAGGCGTGCGCGGCGATTTCGGCAGTATCAGCATTGCATTAACCCTGCTGTGGGCGCTCTTTACCAGCATGTTAC
TCCTCTCCTGGTATGTGATTCGCCGGATGGTCAGCAACATGTATGTTCTGCAAAGCTCGTTGCAGTGGCAGGCGTGGCAC
GACACCTTAACGCGTTTATATAACCGTGGCGCATTGTTCGAAAAAGCCTGTCCGCTCGCTAAATTGTGTCAGACGCACCA
ACATCCTTTTTCTGTCATTCAGGTCGATCTTGACCATTTTAAAGCGATTAATGACCGCTTTGGTCATCAGGCGGGCGACC
GTGTTCTTTCTCATGCTGCCGGATTAATTAGCAGTTCCTTGCGTGCGCAGGACATTGCCGGGCGGGTCGGTGGTGAGGAG
TTTTGTGTGATTCTGCCAGGCGCGAATCTGACGCAGGCTGCGGAGGTCGCAGAACGTATTCGCCTGAAGTTAAATGAAAA
AGAGATGCTGATCGCCAAGAGTACAACGATACGCATTAGTGCCTCGCTGGGGGTAAGCAGCAGCGAGGAAACCGGTGATT
ATGATTTTGAACAACTCCAGTCATTGGCCGACCGTCGGCTTTACCTCGCAAAACAGGCCGGGCGCAATCGGGTATTCGCG
AGCGATAACGCTTAA

Upstream 100 bases:

>100_bases
GCGTCTTATCATGCCACCATTATAAAATTATCGCTGTTTTGCGGTACGCTATCGCCGGGTTATGCCAGAATCATAAAAAA
GCAGGTTGGGAGTCGTCAGG

Downstream 100 bases:

>100_bases
CGGGCGGGGAAAAAATGGTCCAGCCCTTCACGCCAGCCTTCCGGTCCTTCACGCTGCGTTCGCCAGACGCGGGCCGGATC
CTCATCATGCAGATGGACCC

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 564; Mature: 564

Protein sequence:

>564_residues
MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIF
LRNGMREALVAPLDFISLRNAVTEFEQHRDEHAWQIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYL
LRLAHNSSSMVEQAVYVSRAGFYVSTLPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTV
SVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRG
GIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWH
DTLTRLYNRGALFEKACPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEE
FCVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFA
SDNA

Sequences:

>Translated_564_residues
MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIF
LRNGMREALVAPLDFISLRNAVTEFEQHRDEHAWQIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYL
LRLAHNSSSMVEQAVYVSRAGFYVSTLPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTV
SVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRG
GIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWH
DTLTRLYNRGALFEKACPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEE
FCVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFA
SDNA
>Mature_564_residues
MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIF
LRNGMREALVAPLDFISLRNAVTEFEQHRDEHAWQIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYL
LRLAHNSSSMVEQAVYVSRAGFYVSTLPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTV
SVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRG
GIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWH
DTLTRLYNRGALFEKACPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEE
FCVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFA
SDNA

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=564, Percent_Identity=98.0496453900709, Blast_Score=1148, Evalue=0.0,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=35.2941176470588, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI145693134, Length=187, Percent_Identity=34.2245989304813, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1788381, Length=167, Percent_Identity=37.7245508982036, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787802, Length=171, Percent_Identity=38.5964912280702, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=35.4651162790698, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1786584, Length=135, Percent_Identity=37.037037037037, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI87081974, Length=220, Percent_Identity=30.9090909090909, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788085, Length=185, Percent_Identity=32.972972972973, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI87081977, Length=164, Percent_Identity=31.7073170731707, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1787056, Length=169, Percent_Identity=31.9526627218935, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787816, Length=130, Percent_Identity=36.1538461538462, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=32.5581395348837, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 64221; Mature: 64221

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHL
CCCCHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHH
ENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFISLRNAVTEFEQHRDEHAWQIELNR
HHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
RRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAVYVSRA
CCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
GFYVSTLPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTV
CCHHHHHHHHHHCCCCCHHEEEECCCEEECCCCCCCCHHHEEEECCCCCCCCCCCCEEEE
SVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGN
EEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHEECCCCCCCCCC
IFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISI
CCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHCCCCEEEEEEEHHCCCCCCCCHHHH
ALTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHCCCHH
KLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEE
HHHHCCCCCCEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FCVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQ
EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHH
SLADRRLYLAKQAGRNRVFASDNA
HHHHHHHHHHHHCCCCCEEECCCC
>Mature Secondary Structure
MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHL
CCCCHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHH
ENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFISLRNAVTEFEQHRDEHAWQIELNR
HHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
RRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAVYVSRA
CCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
GFYVSTLPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTV
CCHHHHHHHHHHCCCCCHHEEEECCCEEECCCCCCCCHHHEEEECCCCCCCCCCCCEEEE
SVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGN
EEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHEECCCCCCCCCC
IFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISI
CCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHCCCCEEEEEEEHHCCCCCCCCHHHH
ALTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHCCCHH
KLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEE
HHHHCCCCCCEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FCVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQ
EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHH
SLADRRLYLAKQAGRNRVFASDNA
HHHHHHHHHHHHCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]