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The map label for this gene is yohD

Identifier: 218699254

GI number: 218699254

Start: 907436

End: 908014

Strand: Reverse

Name: yohD

Synonym: ECIAI39_0860

Alternate gene names: 218699254

Gene position: 908014-907436 (Counterclockwise)

Preceding gene: 218699257

Following gene: 218699250

Centisome position: 17.69

GC content: 54.4

Gene sequence:

>579_bases
ATGGATCTCAATACACTCATCTCACAATATGGTTATGCCGCGCTGGTGATCGGTAGCCTGGCGGAAGGTGAAACCGTGAC
TTTGCTGGGAGGCGTTGCGGCACATCAGGGGCTATTAAAGTTCCCGCTGGTGGTACTTTCTGTGGCGCTTGGCGGCATGA
TTGGCGACCAGGTGCTTTATCTGTGCGGGCGGCGCTTTGGCGGCAAGCTATTACGCCGTTTCTCGAAACATCAGGATAAA
ATTGAGCGGGCGCAGAAACTTATCCAACGCCATCCGTATCTGTTTGTCATTGGTACGCGTTTTATGTATGGCTTTCGGGT
CATTGGCCCGACGCTGATTGGTGCCAGCCAGCTGCCGCCGAAAATCTTTCTGCCGCTGAATATTCTCGGCGCATTTGCCT
GGGCGCTGATTTTTACCACTATCGGTTACGCTGGTGGGCAGGTGATTGCGCCGTGGTTGCACAATCTCGACCAGCATTTG
AAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTAGGCGTGCGCTGGTGGCTGAAACGGCGCGGGAAGAAAAA
GCCGGATCATCAGGCGTAA

Upstream 100 bases:

>100_bases
TCACTCATGTAATTTGCACCGTCTGATGTACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGTATGCTTACAGGCAAGC
AAAGGGAGACAGACTGTCCT

Downstream 100 bases:

>100_bases
AGCAGTTGCCACAGATAAGCATTCACGCCACATCCGGCACCGGATGTTCCATGCCTGATGCGACGCTGGCGTGTCTTATC
TGGCCTAACCCATTGAAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDK
IERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL
KHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA

Sequences:

>Translated_192_residues
MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDK
IERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL
KHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA
>Mature_192_residues
MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDK
IERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL
KHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family

Homologues:

Organism=Escherichia coli, GI87082056, Length=192, Percent_Identity=100, Blast_Score=383, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOHD_ECOLI (P33366)

Other databases:

- EMBL:   U00007
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   G64981
- RefSeq:   AP_002733.1
- RefSeq:   NP_416640.2
- ProteinModelPortal:   P33366
- DIP:   DIP-12805N
- MINT:   MINT-1269234
- STRING:   P33366
- EnsemblBacteria:   EBESCT00000000923
- EnsemblBacteria:   EBESCT00000017408
- GeneID:   946661
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW2124
- KEGG:   eco:b2136
- EchoBASE:   EB1954
- EcoGene:   EG12017
- eggNOG:   COG0586
- GeneTree:   EBGT00050000009773
- HOGENOM:   HBG657460
- OMA:   FMYGFRI
- ProtClustDB:   CLSK880309
- BioCyc:   EcoCyc:EG12017-MONOMER
- Genevestigator:   P33366
- InterPro:   IPR015414

Pfam domain/function: PF09335 SNARE_assoc

EC number: NA

Molecular weight: Translated: 21445; Mature: 21445

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x209d39f4)-; HASH(0x20a53af4)-; HASH(0x1f2d8bb4)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLY
CCHHHHHHHHCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCC
KIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWWL
EEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRRGKKKPDHQA
HHCCCCCCCCCH
>Mature Secondary Structure
MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLY
CCHHHHHHHHCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCC
KIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWWL
EEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRRGKKKPDHQA
HHCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503