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The map label for this gene is ybdO

Identifier: 218698978

GI number: 218698978

Start: 616231

End: 617169

Strand: Reverse

Name: ybdO

Synonym: ECIAI39_0581

Alternate gene names: 218698978

Gene position: 617169-616231 (Counterclockwise)

Preceding gene: 218698979

Following gene: 218698977

Centisome position: 12.03

GC content: 36.53

Gene sequence:

>939_bases
ATGATTTATGGAAGAGACAATACAACGGAGTATGTTATGGCTAATCTTTATGATCTAAAAAAATTTGACCTCAATTTACT
GGTTATATTTGAATGTATTTATCAACATCTCAGCATTAGTAAAGCGGCAGAATCATTATATATAACGCCCTCTGCTGTTA
GTCAGTCGTTACAACGTTTACGTGCGCAATTTAATGACCCGTTATTCATTCGCTCAGGGAAAGGTATCGCGCCGACTACA
ACAGGGTTAAACCTGCATCACCATCTTGAGAAAAATCTCAGAGGCCTTGAACAAACGATCAATATCGTTAATAAGTCTGA
ACTAAAGAAAAATTTTATTATCTACGGTCCTCAGCTTATTTCTTGTACTAATAACAACATGCTAATCCGCTGTCTTAGAC
AAGATACTTCAATCGATATAGAATGCCATGACATACTGCTTTCAGCTGAAAATGCCGAAGAACTGTTGGTTCAACGCAAA
ACTGACCTGGCAATTACACTACAACCAGTAATTAGTCGCTCTGTCATCTGCATGCCGTTACACACTATTCGCAATTCCCT
TATATGTAGCAACAAACATCCTCGTATTACTGATACCAGTAACTATGAACAAATTATCGCCGAAGAATTCACCCTGTTGA
TATCTAAATCAGCAGGGATTGACGAAATTCAAATGGACATAGATGAACGTTTTATGAACCGTAAAGTTTCATTTCGCAGT
TCTTCTTTGATGACTATAATTAATAGTATTTCTGTTACTGACTTATTAGGCATTGTGCCCACCGAACTGTACAATTTACA
TCGTGACTTTTTGAAGTTAAAAGAAATAAAACTGGAACAACCTCTTCCTGCGGTTAAACTTTATATTTCCTATAACAAGG
CTTCGTTGAACAACCTTGTCTTCTCCCGATTCATAGATCGTTTAAATGATAGTTTCTGA

Upstream 100 bases:

>100_bases
GTAACCCACCTGACAGCTATGCTATTTTAGAAAATCTTAATCCAAAGTTAAGCAGAAAAACATAACACATATAAATACAA
CAACATTATTGATCAAGTGA

Downstream 100 bases:

>100_bases
TTCATTACCACTGACAAATAATATATTACGCATCAATTAATTCATTATGTGAATATAAAATAATGTGCTCTATCTTGCTT
CGTTTATCCTATAATTAGCG

Product: putative LysR-type DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MIYGRDNTTEYVMANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTT
TGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLISCTNNNMLIRCLRQDTSIDIECHDILLSAENAEELLVQRK
TDLAITLQPVISRSVICMPLHTIRNSLICSNKHPRITDTSNYEQIIAEEFTLLISKSAGIDEIQMDIDERFMNRKVSFRS
SSLMTIINSISVTDLLGIVPTELYNLHRDFLKLKEIKLEQPLPAVKLYISYNKASLNNLVFSRFIDRLNDSF

Sequences:

>Translated_312_residues
MIYGRDNTTEYVMANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTT
TGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLISCTNNNMLIRCLRQDTSIDIECHDILLSAENAEELLVQRK
TDLAITLQPVISRSVICMPLHTIRNSLICSNKHPRITDTSNYEQIIAEEFTLLISKSAGIDEIQMDIDERFMNRKVSFRS
SSLMTIINSISVTDLLGIVPTELYNLHRDFLKLKEIKLEQPLPAVKLYISYNKASLNNLVFSRFIDRLNDSF
>Mature_312_residues
MIYGRDNTTEYVMANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTT
TGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLISCTNNNMLIRCLRQDTSIDIECHDILLSAENAEELLVQRK
TDLAITLQPVISRSVICMPLHTIRNSLICSNKHPRITDTSNYEQIIAEEFTLLISKSAGIDEIQMDIDERFMNRKVSFRS
SSLMTIINSISVTDLLGIVPTELYNLHRDFLKLKEIKLEQPLPAVKLYISYNKASLNNLVFSRFIDRLNDSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786820, Length=300, Percent_Identity=89, Blast_Score=555, Evalue=1e-159,
Organism=Escherichia coli, GI87081766, Length=302, Percent_Identity=30.1324503311258, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI87081684, Length=282, Percent_Identity=22.3404255319149, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI157672245, Length=257, Percent_Identity=23.3463035019455, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35725; Mature: 35725

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYGRDNTTEYVMANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRL
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHH
RAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLI
HHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEE
SCTNNNMLIRCLRQDTSIDIECHDILLSAENAEELLVQRKTDLAITLQPVISRSVICMPL
EECCCCEEEEEEECCCCCEEEEHEEEEECCCHHHHHHHCCCCEEEEEEHHHCCCEEEEEH
HTIRNSLICSNKHPRITDTSNYEQIIAEEFTLLISKSAGIDEIQMDIDERFMNRKVSFRS
HHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
SSLMTIINSISVTDLLGIVPTELYNLHRDFLKLKEIKLEQPLPAVKLYISYNKASLNNLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHH
FSRFIDRLNDSF
HHHHHHHHCCCC
>Mature Secondary Structure
MIYGRDNTTEYVMANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRL
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHH
RAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLI
HHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEE
SCTNNNMLIRCLRQDTSIDIECHDILLSAENAEELLVQRKTDLAITLQPVISRSVICMPL
EECCCCEEEEEEECCCCCEEEEHEEEEECCCHHHHHHHCCCCEEEEEEHHHCCCEEEEEH
HTIRNSLICSNKHPRITDTSNYEQIIAEEFTLLISKSAGIDEIQMDIDERFMNRKVSFRS
HHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
SSLMTIINSISVTDLLGIVPTELYNLHRDFLKLKEIKLEQPLPAVKLYISYNKASLNNLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHH
FSRFIDRLNDSF
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]