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The map label for this gene is ybdH

Identifier: 218698974

GI number: 218698974

Start: 611904

End: 612992

Strand: Reverse

Name: ybdH

Synonym: ECIAI39_0577

Alternate gene names: 218698974

Gene position: 612992-611904 (Counterclockwise)

Preceding gene: 218698976

Following gene: 218698966

Centisome position: 11.94

GC content: 55.56

Gene sequence:

>1089_bases
ATGCCTCACAATCCTATCCGCGTGGTCGTCGGCCCGGCTAACTACTTTTCACATCCCGGAAGTTTCAATCACCTGCACGA
TTTTTTCACTGATGAACAGCTTTCTCGCGCGGTGTGGATCTACGGCGAACGCGCCATTGCTGCGGCGCAAACAAAACTTC
CGCCAGCGTTTGAACTGCCAGGGGCAAAGCATATTTTGTTTCGTGGTCATTGCAGCGAAAGCGATGTACAACAACTGGCG
GCTGAGTCCGGTGACGATCGCAGCGTGGTGATTGGCGTCGGCGGCGGCGCACTGCTCGACACCGCGAAAGCCCTCGCCCG
CCGTCTCGGTCTGCCGTTTGTTGCCGTTCCGACGATCGCCGCTACCTGCGCAGCCTGGACACCGCTCTCTGTCTGGTACA
ACGATGCCGGACAAGCGCTGCATTATGAGATTTTCGACGACGCCAATTTTATGGTGCTGGTGGAACCGGAGATTATCCTC
AACGCGCCGCAAGAATATCTGCTGGCGGGGATCGGTGACACGCTGGCGAAATGGTATGAAGCGGTGGTGCTGGCCCCGCA
ACCAGAAACGTTGTCGTTAACCGTGCGACTGGGGATTAATAACGCGCAGGCCATTCGCGACGTCTTGTTAAACAGTAGCG
AACAGGCGCTTGCCGATCAGCAAAATCACCAGTTAACGCAATCATTTTGCGATGTGGTGGATGCCATTATTGCTGGTGGT
GGGATGGTTGGTGGTCTGGGCGATCGTTTTACGCGTGTGGCGGCAGCTCATGCCGTGCATAACGGTCTGACCGTGCTGCC
GCAAACCGAGAAGTTTCTCCACGGCACCAAAGTCGCCTACGGAATTCTGGTGCAAAGCGCCTTGCTGGGTCAGGATGATG
TGCTGGCGCAATTAACTGGAGCGTATCAGCGTTTTCATCTGCCGACTACGCTGGCGGAGCTGGAAGTGGATATCAATAAT
CAGGCGGAGATCGACAAAGTGATTGCCCACACCTTGCGTCCGGTGGAATCCATTCATTACCTGCCGGTCACGCTGACACC
GGATACGTTGCGTGCAGCGTTCGAAAAAGTGGAATCGTTTAAAGTCTGA

Upstream 100 bases:

>100_bases
TGCCTGATGAAGTTGCGTGTTGAAGGCACTATAACACGATGCTAGTATTTGACAATCAAGACGTTTAGATGTCTAAATAA
AACAATAAGGACAACACAAC

Downstream 100 bases:

>100_bases
CGTACAGATTTAGCAGCAGCGCGCGCCGCCTTTTCCACCGTAGCGCGCGTCCTGCCGCTCACGGAAAAACTCCTCGTAGG
TCATCGGCGTTTGATCGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MPHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGERAIAAAQTKLPPAFELPGAKHILFRGHCSESDVQQLA
AESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL
NAPQEYLLAGIGDTLAKWYEAVVLAPQPETLSLTVRLGINNAQAIRDVLLNSSEQALADQQNHQLTQSFCDVVDAIIAGG
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINN
QAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVESFKV

Sequences:

>Translated_362_residues
MPHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGERAIAAAQTKLPPAFELPGAKHILFRGHCSESDVQQLA
AESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL
NAPQEYLLAGIGDTLAKWYEAVVLAPQPETLSLTVRLGINNAQAIRDVLLNSSEQALADQQNHQLTQSFCDVVDAIIAGG
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINN
QAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVESFKV
>Mature_361_residues
PHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGERAIAAAQTKLPPAFELPGAKHILFRGHCSESDVQQLAA
ESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILN
APQEYLLAGIGDTLAKWYEAVVLAPQPETLSLTVRLGINNAQAIRDVLLNSSEQALADQQNHQLTQSFCDVVDAIIAGGG
MVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQ
AEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVESFKV

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=361, Percent_Identity=98.0609418282548, Blast_Score=725, Evalue=0.0,
Organism=Escherichia coli, GI87082352, Length=360, Percent_Identity=31.9444444444444, Blast_Score=156, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 39178; Mature: 39047

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00913 ADH_IRON_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGERAIAAAQTKLPPAFELP
CCCCCEEEEECCHHHCCCCCCCCHHHHHHCHHHHCCEEEEECCHHHHHHHHCCCCCCCCC
GAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIA
CCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEHHHHH
ATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQEYLLAGIGDTLAKWYE
HHHHCCCCCEEEECCCCCEEEEEEECCCCEEEEECCHHEECCCHHHHHHHHHHHHHHHHH
AVVLAPQPETLSLTVRLGINNAQAIRDVLLNSSEQALADQQNHQLTQSFCDVVDAIIAGG
EEEECCCCCEEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTG
CCCCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVESF
HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHC
KV
CC
>Mature Secondary Structure 
PHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGERAIAAAQTKLPPAFELP
CCCCEEEEECCHHHCCCCCCCCHHHHHHCHHHHCCEEEEECCHHHHHHHHCCCCCCCCC
GAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIA
CCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEHHHHH
ATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQEYLLAGIGDTLAKWYE
HHHHCCCCCEEEECCCCCEEEEEEECCCCEEEEECCHHEECCCHHHHHHHHHHHHHHHHH
AVVLAPQPETLSLTVRLGINNAQAIRDVLLNSSEQALADQQNHQLTQSFCDVVDAIIAGG
EEEECCCCCEEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTG
CCCCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVESF
HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHC
KV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1848300; 7567469 [H]