Click here to switch to the map view.

The map label for this gene is htrE

Identifier: 218698560

GI number: 218698560

Start: 164408

End: 166903

Strand: Reverse

Name: htrE

Synonym: ECIAI39_0143

Alternate gene names: 218698560

Gene position: 166903-164408 (Counterclockwise)

Preceding gene: 218698561

Following gene: 218698559

Centisome position: 3.25

GC content: 43.51

Gene sequence:

>2496_bases
GTGACTATAAAATATACTAAAAATTATCATCATCTGACCCGTATCGCCACGTTTTGCGCGCTGCTGTATTGCAACAGTGC
TTTCAGTGCTGAACTCGTTGAATATGACCATACCTTCCTGATGGGGCAGAATGCATCTAATATTGATCTCAGCCGGTACA
GTGAAGGTAACCCCGCTATACCGGGTGTTTACGACGTCAGTGTTTATGTAAACGACCAACCAATTATTAACCAAAGTATT
ACATTTGTCGCAATTGAAGGAAAAAAGAACGCCCAGGCTTGTATCACATTAAAGAATTTATTGCAGTTTCATATTAATTC
TCCCGATATAAATAACGAAAAAGCCGTTCTGCTTGCCCGGGATGAAGCTCTCGGCAATTGCCTCAATTTGACGGAAATTA
TCCCTCAGGCTTCCGTTCGTTATGACGTTAACGATCAACGTCTGGATATAGACGTTCCTCAGGCCTGGGTAATGAAAAAT
TACCAAAACTATGTTGATCCATCGTTATGGGAAAATGGCATTAATGCAGCCATGTTGTCATACAACCTCAACGGATATCA
TAGTGAAACCCCTGGTCGAAAAAATGACAGCATTTATGCTGCTTTTAACGGTGGGATGAATTTGGGTGCATGGCGGCTGC
GTGCCTCAGGCAACTACAACTGGATGACCGATTCTGGCGGTAATTATGATTTTAAGAATCGGTATATACAGCGTGATATC
GCCTCACTACGCTCTCAATTCATTATTGGTGAGTCTTATACGACGGGCGAAACCTTTGATTCCGTCAGTATCCGAGGCAT
TCGTTTATACAGTGACAGCCGCATGTTGCCTCCGACATTAGCCAGTTTTGCGCCTATCATTCATGGCGTTGCTAATACCA
ACGCCAAAGTCACTATTACGCAAGGTGGCTATAAGATTTATGAAACGACGGTGCCACCAGGCGCTTTCGTCATTGATGAT
CTGAGTCCATCAGGTTACGGCAGCGATCTTATTGTTACCATCGAAGAATCCGATGGCTCAAAGCGGACATTCTCGCAACC
TTTCTCATCAGTTGTTCAAATGTTACGCCCAGGCGTTGGACGTTGGGATATTAGCGGCGGTCAGATTTTAAAAGATGATA
TTCAGGATGAGCCTAATTTATTTCAGGCCAGCTACTACTATGGTTTGAATAACTACCTGACGGGTTATACCGGTATTCAG
CTTACCGATAATAATTATACCGCCGGGTTGTTAGGTCTTGGTCTGAATACTTCAGTCGGTGCATTTTCTTTCGATGTGAC
TCACTCAAATGTTCGTATCCCGGATGATAAAACATACGAGGGGCAAAGTTATCGTGTTTCCTGGAACAAATTATTCGAAG
AAACAAGTACTTCACTGAATATCGCAGCCTATCGCTATTCGACACAGAATTATCTTGGTCTTAATGATGCACTAACTCTG
ATTGATGAAGTGAAACATCCCGAACAAGATCTTGAACCGAAATCCATGCGTAATTACTCACGCATGAAAAATCAGGTTAC
GGTCAGTATTAACCAACCGTTGAAGTTTGAGAAAAAAGATTACGGTTCTTTTTATCTTTCTGGTAGTTGGTCCGATTACT
GGGCTTCCGGGCAAAATCGTAGCAATTACTCCATTGGCTATAGTAACAGTGCATCCTGGGGCAGCTACAGCATTAGTGCA
CAGCGTTCATGGAATGAGGACGGCGACACTGATGATAGCGTTTATCTCAGTTTCACCATTCCTATTGAAAAATTACTTGG
CACTGAACAGCGTACTTCAGGTTTCCAGAGTATTGACACGCAACTAAGCAGTGACTTTAAAGGCAATAACCAACTCAACG
TCAGTAGCAGTGGCTATAGCGATAATGCGCGCGTCAGTTATAGCGTGAATACTGGTTATACGATGAATAAATCCAGTGAA
GATTTAAGTTATGTCGGTGGCTATGCCAGCTATGAATCACCGTGGGGAACTCTGGCAGGTTCAGTTTCTGCAAACAGCGA
TAACAGTCGTCAAGTTTCTCTCAGCACCGACGGTGGTTTTGTATTGCATAGCGGCGGCCTGACCTTCAGTAATGACAGTT
TTAGCGACTCCGATACACTGGCGGTAGTTCAGGCTCCAGGTGCTCAAGGAGCGCGAATAAATTATGGCAACAGTACTATC
GATCGATGGGGTTATGGTGTCACCAGCGCTCTTTCTCCTTATCATGAAAACCGTATCGCGCTGGATATCAACGATCTTGA
GAACGATGTTGAATTAAAAAGTACCAGTGCAGTAGCTGTACCGCGTCAGGGTTCAGTCGTCTTTGCTGATTTTGAAACCG
TGCAAGGGCAATCAGCCATTATGAACATCACACGAAGTGATGGTAAAAATATTCCATTTGCTGCAGATATTTATGATGAG
CAAGGCAATGTCATTGGTAATGTTGGACAGGGTGGACAAGCATTTGTTCGTGGTATTGAGCAGCAGGGAAATATCAGCAT
TAAATGGCTCGAATAA

Upstream 100 bases:

>100_bases
GCAAAAGTGCATTTTTACGCCATTAATGACTTTGGTGGCGCAATTGAAGGTAATGCCAGGCTGTAATCAGGCAAGGATAT
AATTCCGCAGGAAGCATAGT

Downstream 100 bases:

>100_bases
AGTAAACCCGTAAGTTGTCTTGCGCATTATCAACAAAGTTCAGAAGCAGAAAAAATAGCGCAATCTATTATTCTGAATGG
AATTCGGTGTCAGATTCAGT

Product: putative outer membrane usher protein

Products: NA

Alternate protein names: Heat shock protein E [H]

Number of amino acids: Translated: 831; Mature: 830

Protein sequence:

>831_residues
MTIKYTKNYHHLTRIATFCALLYCNSAFSAELVEYDHTFLMGQNASNIDLSRYSEGNPAIPGVYDVSVYVNDQPIINQSI
TFVAIEGKKNAQACITLKNLLQFHINSPDINNEKAVLLARDEALGNCLNLTEIIPQASVRYDVNDQRLDIDVPQAWVMKN
YQNYVDPSLWENGINAAMLSYNLNGYHSETPGRKNDSIYAAFNGGMNLGAWRLRASGNYNWMTDSGGNYDFKNRYIQRDI
ASLRSQFIIGESYTTGETFDSVSIRGIRLYSDSRMLPPTLASFAPIIHGVANTNAKVTITQGGYKIYETTVPPGAFVIDD
LSPSGYGSDLIVTIEESDGSKRTFSQPFSSVVQMLRPGVGRWDISGGQILKDDIQDEPNLFQASYYYGLNNYLTGYTGIQ
LTDNNYTAGLLGLGLNTSVGAFSFDVTHSNVRIPDDKTYEGQSYRVSWNKLFEETSTSLNIAAYRYSTQNYLGLNDALTL
IDEVKHPEQDLEPKSMRNYSRMKNQVTVSINQPLKFEKKDYGSFYLSGSWSDYWASGQNRSNYSIGYSNSASWGSYSISA
QRSWNEDGDTDDSVYLSFTIPIEKLLGTEQRTSGFQSIDTQLSSDFKGNNQLNVSSSGYSDNARVSYSVNTGYTMNKSSE
DLSYVGGYASYESPWGTLAGSVSANSDNSRQVSLSTDGGFVLHSGGLTFSNDSFSDSDTLAVVQAPGAQGARINYGNSTI
DRWGYGVTSALSPYHENRIALDINDLENDVELKSTSAVAVPRQGSVVFADFETVQGQSAIMNITRSDGKNIPFAADIYDE
QGNVIGNVGQGGQAFVRGIEQQGNISIKWLE

Sequences:

>Translated_831_residues
MTIKYTKNYHHLTRIATFCALLYCNSAFSAELVEYDHTFLMGQNASNIDLSRYSEGNPAIPGVYDVSVYVNDQPIINQSI
TFVAIEGKKNAQACITLKNLLQFHINSPDINNEKAVLLARDEALGNCLNLTEIIPQASVRYDVNDQRLDIDVPQAWVMKN
YQNYVDPSLWENGINAAMLSYNLNGYHSETPGRKNDSIYAAFNGGMNLGAWRLRASGNYNWMTDSGGNYDFKNRYIQRDI
ASLRSQFIIGESYTTGETFDSVSIRGIRLYSDSRMLPPTLASFAPIIHGVANTNAKVTITQGGYKIYETTVPPGAFVIDD
LSPSGYGSDLIVTIEESDGSKRTFSQPFSSVVQMLRPGVGRWDISGGQILKDDIQDEPNLFQASYYYGLNNYLTGYTGIQ
LTDNNYTAGLLGLGLNTSVGAFSFDVTHSNVRIPDDKTYEGQSYRVSWNKLFEETSTSLNIAAYRYSTQNYLGLNDALTL
IDEVKHPEQDLEPKSMRNYSRMKNQVTVSINQPLKFEKKDYGSFYLSGSWSDYWASGQNRSNYSIGYSNSASWGSYSISA
QRSWNEDGDTDDSVYLSFTIPIEKLLGTEQRTSGFQSIDTQLSSDFKGNNQLNVSSSGYSDNARVSYSVNTGYTMNKSSE
DLSYVGGYASYESPWGTLAGSVSANSDNSRQVSLSTDGGFVLHSGGLTFSNDSFSDSDTLAVVQAPGAQGARINYGNSTI
DRWGYGVTSALSPYHENRIALDINDLENDVELKSTSAVAVPRQGSVVFADFETVQGQSAIMNITRSDGKNIPFAADIYDE
QGNVIGNVGQGGQAFVRGIEQQGNISIKWLE
>Mature_830_residues
TIKYTKNYHHLTRIATFCALLYCNSAFSAELVEYDHTFLMGQNASNIDLSRYSEGNPAIPGVYDVSVYVNDQPIINQSIT
FVAIEGKKNAQACITLKNLLQFHINSPDINNEKAVLLARDEALGNCLNLTEIIPQASVRYDVNDQRLDIDVPQAWVMKNY
QNYVDPSLWENGINAAMLSYNLNGYHSETPGRKNDSIYAAFNGGMNLGAWRLRASGNYNWMTDSGGNYDFKNRYIQRDIA
SLRSQFIIGESYTTGETFDSVSIRGIRLYSDSRMLPPTLASFAPIIHGVANTNAKVTITQGGYKIYETTVPPGAFVIDDL
SPSGYGSDLIVTIEESDGSKRTFSQPFSSVVQMLRPGVGRWDISGGQILKDDIQDEPNLFQASYYYGLNNYLTGYTGIQL
TDNNYTAGLLGLGLNTSVGAFSFDVTHSNVRIPDDKTYEGQSYRVSWNKLFEETSTSLNIAAYRYSTQNYLGLNDALTLI
DEVKHPEQDLEPKSMRNYSRMKNQVTVSINQPLKFEKKDYGSFYLSGSWSDYWASGQNRSNYSIGYSNSASWGSYSISAQ
RSWNEDGDTDDSVYLSFTIPIEKLLGTEQRTSGFQSIDTQLSSDFKGNNQLNVSSSGYSDNARVSYSVNTGYTMNKSSED
LSYVGGYASYESPWGTLAGSVSANSDNSRQVSLSTDGGFVLHSGGLTFSNDSFSDSDTLAVVQAPGAQGARINYGNSTID
RWGYGVTSALSPYHENRIALDINDLENDVELKSTSAVAVPRQGSVVFADFETVQGQSAIMNITRSDGKNIPFAADIYDEQ
GNVIGNVGQGGQAFVRGIEQQGNISIKWLE

Specific function: Probable porin-like protein necessary for the assembly of a pilin-type protein [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1786332, Length=831, Percent_Identity=97.9542719614922, Blast_Score=1684, Evalue=0.0,
Organism=Escherichia coli, GI1788427, Length=821, Percent_Identity=32.7649208282582, Blast_Score=406, Evalue=1e-114,
Organism=Escherichia coli, GI1790772, Length=855, Percent_Identity=32.280701754386, Blast_Score=395, Evalue=1e-111,
Organism=Escherichia coli, GI1786744, Length=844, Percent_Identity=31.7535545023697, Blast_Score=379, Evalue=1e-106,
Organism=Escherichia coli, GI1787172, Length=846, Percent_Identity=32.8605200945626, Blast_Score=378, Evalue=1e-106,
Organism=Escherichia coli, GI1789533, Length=822, Percent_Identity=31.8734793187348, Blast_Score=370, Evalue=1e-103,
Organism=Escherichia coli, GI87081778, Length=843, Percent_Identity=26.9276393831554, Blast_Score=245, Evalue=9e-66,
Organism=Escherichia coli, GI1789610, Length=795, Percent_Identity=23.8993710691824, Blast_Score=132, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 91697; Mature: 91566

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKYTKNYHHLTRIATFCALLYCNSAFSAELVEYDHTFLMGQNASNIDLSRYSEGNPAI
CEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCCCEECCCCCCCC
PGVYDVSVYVNDQPIINQSITFVAIEGKKNAQACITLKNLLQFHINSPDINNEKAVLLAR
CCEEEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHEECCCCCCCCCCEEEEEC
DEALGNCLNLTEIIPQASVRYDVNDQRLDIDVPQAWVMKNYQNYVDPSLWENGINAAMLS
CHHHCCHHHHHHHCCCCCEEECCCCCEEEEECCHHHHHHHHHHHCCHHHHHCCCCEEEEE
YNLNGYHSETPGRKNDSIYAAFNGGMNLGAWRLRASGNYNWMTDSGGNYDFKNRYIQRDI
EECCCEECCCCCCCCCCEEEEECCCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHH
ASLRSQFIIGESYTTGETFDSVSIRGIRLYSDSRMLPPTLASFAPIIHGVANTNAKVTIT
HHHHHHEEECCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
QGGYKIYETTVPPGAFVIDDLSPSGYGSDLIVTIEESDGSKRTFSQPFSSVVQMLRPGVG
ECCEEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
RWDISGGQILKDDIQDEPNLFQASYYYGLNNYLTGYTGIQLTDNNYTAGLLGLGLNTSVG
EEECCCCCEEHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCC
AFSFDVTHSNVRIPDDKTYEGQSYRVSWNKLFEETSTSLNIAAYRYSTQNYLGLNDALTL
EEEEEEECCEEECCCCCCCCCCEEEEEHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHH
IDEVKHPEQDLEPKSMRNYSRMKNQVTVSINQPLKFEKKDYGSFYLSGSWSDYWASGQNR
HHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHCCCCCC
SNYSIGYSNSASWGSYSISAQRSWNEDGDTDDSVYLSFTIPIEKLLGTEQRTSGFQSIDT
CCEEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEHHHHCCCCHHHCCHHHHHH
QLSSDFKGNNQLNVSSSGYSDNARVSYSVNTGYTMNKSSEDLSYVGGYASYESPWGTLAG
HHHCCCCCCCEEEECCCCCCCCCEEEEEECCCEEECCCCCCHHHCCCCCCCCCCCCCEEE
SVSANSDNSRQVSLSTDGGFVLHSGGLTFSNDSFSDSDTLAVVQAPGAQGARINYGNSTI
EEECCCCCCEEEEEECCCCEEEECCCEEECCCCCCCCCCEEEEECCCCCCCEEECCCCCH
DRWGYGVTSALSPYHENRIALDINDLENDVELKSTSAVAVPRQGSVVFADFETVQGQSAI
HHCCCCHHHHCCCCCCCEEEEEECCCCCCEEEECCCEEEECCCCCEEEEEHHHCCCCCEE
MNITRSDGKNIPFAADIYDEQGNVIGNVGQGGQAFVRGIEQQGNISIKWLE
EEEECCCCCCCCEEEEEECCCCCEEEECCCCHHHHHHHHCCCCCEEEEEEC
>Mature Secondary Structure 
TIKYTKNYHHLTRIATFCALLYCNSAFSAELVEYDHTFLMGQNASNIDLSRYSEGNPAI
EEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCCCEECCCCCCCC
PGVYDVSVYVNDQPIINQSITFVAIEGKKNAQACITLKNLLQFHINSPDINNEKAVLLAR
CCEEEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHEECCCCCCCCCCEEEEEC
DEALGNCLNLTEIIPQASVRYDVNDQRLDIDVPQAWVMKNYQNYVDPSLWENGINAAMLS
CHHHCCHHHHHHHCCCCCEEECCCCCEEEEECCHHHHHHHHHHHCCHHHHHCCCCEEEEE
YNLNGYHSETPGRKNDSIYAAFNGGMNLGAWRLRASGNYNWMTDSGGNYDFKNRYIQRDI
EECCCEECCCCCCCCCCEEEEECCCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHH
ASLRSQFIIGESYTTGETFDSVSIRGIRLYSDSRMLPPTLASFAPIIHGVANTNAKVTIT
HHHHHHEEECCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
QGGYKIYETTVPPGAFVIDDLSPSGYGSDLIVTIEESDGSKRTFSQPFSSVVQMLRPGVG
ECCEEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
RWDISGGQILKDDIQDEPNLFQASYYYGLNNYLTGYTGIQLTDNNYTAGLLGLGLNTSVG
EEECCCCCEEHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCC
AFSFDVTHSNVRIPDDKTYEGQSYRVSWNKLFEETSTSLNIAAYRYSTQNYLGLNDALTL
EEEEEEECCEEECCCCCCCCCCEEEEEHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHH
IDEVKHPEQDLEPKSMRNYSRMKNQVTVSINQPLKFEKKDYGSFYLSGSWSDYWASGQNR
HHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHCCCCCC
SNYSIGYSNSASWGSYSISAQRSWNEDGDTDDSVYLSFTIPIEKLLGTEQRTSGFQSIDT
CCEEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEHHHHCCCCHHHCCHHHHHH
QLSSDFKGNNQLNVSSSGYSDNARVSYSVNTGYTMNKSSEDLSYVGGYASYESPWGTLAG
HHHCCCCCCCEEEECCCCCCCCCEEEEEECCCEEECCCCCCHHHCCCCCCCCCCCCCEEE
SVSANSDNSRQVSLSTDGGFVLHSGGLTFSNDSFSDSDTLAVVQAPGAQGARINYGNSTI
EEECCCCCCEEEEEECCCCEEEECCCEEECCCCCCCCCCEEEEECCCCCCCEEECCCCCH
DRWGYGVTSALSPYHENRIALDINDLENDVELKSTSAVAVPRQGSVVFADFETVQGQSAI
HHCCCCHHHHCCCCCCCEEEEEECCCCCCEEEECCCEEEECCCCCEEEEEHHHCCCCCEE
MNITRSDGKNIPFAADIYDEQGNVIGNVGQGGQAFVRGIEQQGNISIKWLE
EEEECCCCCCCCEEEEEECCCCCEEEECCCCHHHHHHHHCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]