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The map label for this gene is ygaV

Identifier: 218696264

GI number: 218696264

Start: 3007900

End: 3008199

Strand: Direct

Name: ygaV

Synonym: EC55989_2935

Alternate gene names: 218696264

Gene position: 3007900-3008199 (Clockwise)

Preceding gene: 218696261

Following gene: 218696265

Centisome position: 58.35

GC content: 52.67

Gene sequence:

>300_bases
ATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCATCCTAAACGATT
GCTGATTCTGTGCATGCTTAGCGGTTCCCCCGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTG
CGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAACGCATTCTATATTCC
ATTAAAAATGAGGCGGTAAATGCCATTATCGCCACCCTGAAAAATGTCTATTGTCCGTAA

Upstream 100 bases:

>100_bases
GTTTCAGCTTACGCTTTTACTCTCATTTACGCTGCTGAGGCTGGTATATGTTGCATTTTTAGTTTAGAGTTTACTTAATT
TAGAAAATACTTAAATAAAT

Downstream 100 bases:

>100_bases
GGAGTCACTATGGCTTTGACAACCATTTCGCCGCATGATGCACAAGAATTAATCGCACGCGGCGCAAAGTTAATCGATAT
TCGTGACGCTGATGAATATC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYS
IKNEAVNAIIATLKNVYCP

Sequences:

>Translated_99_residues
MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYS
IKNEAVNAIIATLKNVYCP
>Mature_98_residues
TELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSI
KNEAVNAIIATLKNVYCP

Specific function: Functions as transcription repressor (Probable)

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1789021, Length=99, Percent_Identity=100, Blast_Score=199, Evalue=2e-53,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YGAV_ECOLI (P77295)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   D65046
- RefSeq:   AP_003240.1
- RefSeq:   NP_417153.1
- PDB:   3CUO
- PDBsum:   3CUO
- ProteinModelPortal:   P77295
- SMR:   P77295
- STRING:   P77295
- EnsemblBacteria:   EBESCT00000004688
- EnsemblBacteria:   EBESCT00000014836
- GeneID:   947136
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW2642
- KEGG:   eco:b2667
- EchoBASE:   EB3296
- EcoGene:   EG13524
- eggNOG:   COG0640
- GeneTree:   EBGT00050000010608
- HOGENOM:   HBG742701
- OMA:   AMANPKR
- ProtClustDB:   CLSK880453
- BioCyc:   EcoCyc:G7397-MONOMER
- Genevestigator:   P77295
- GO:   GO:0005622
- InterPro:   IPR001845
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00778
- SMART:   SM00418

Pfam domain/function: PF01022 HTH_5

EC number: NA

Molecular weight: Translated: 10596; Mature: 10465

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS00846 HTH_ARSR_1; PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLA
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHH
RMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLA
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHH
RMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503