Click here to switch to the map view.

The map label for this gene is yfjD

Identifier: 218696236

GI number: 218696236

Start: 2972001

End: 2973197

Strand: Direct

Name: yfjD

Synonym: EC55989_2901

Alternate gene names: 218696236

Gene position: 2972001-2973197 (Clockwise)

Preceding gene: 218696235

Following gene: 218696238

Centisome position: 57.65

GC content: 51.63

Gene sequence:

>1197_bases
ATGACCCTCAACCGCTATCGTCTGCGACATATGGCGAAACAGGGTAATCGCTCGGCCAAACGCGTCGAAAAATTGCTGCG
TAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTG
TTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACCTTTGTGGTGCTGGTTTTTGCCGAA
GTGTTGCCGAAAACTATCGCTGCGCTATACCCGGAAAAAGTCGCTTATCCGAGTAGTATTCTGTTAGCACCGCTGCAAAT
TTTGATGATGCCGCTGGTCTGGTTGCTGAACGCTATCACCCGCATGTTAATGCGCATGATGGGCATCAAAACCGATATCG
TGGTCAGCGGCTCTTTGAGCAAAGAAGAGTTGCGCACTATCGTGCATGAATCGCGCTCACAAATTTCCCGTCGCAATCAG
GATATGCTGCTGTCGGTGCTCGATCTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTAT
TGATATCAACGATGACTGGAAATCGATTCTGCGCCAACTCTCCCACTCACCTCACGGGCGCATCGTGCTCTACCGTGATT
CGCTGGACGACGCCATCAGTATGCTGCGAGTACGTGAAGCCTGGCGGTTGATGTCGGAGAAAAAAGAGTTCACCAAAGAA
ACCATGCTGCGCGCCGCGGACGAGATCTATTTTGTGCCGGAAGGTACGCCGCTCAGCACGCAGTTGGTGAAGTTTCAGCG
CAACAAAAAGAAAGTCGGCCTGGTCGTCAACGAGTATGGAGACATTCAGGGGCTGGTGACGGTTGAAGATATTCTGGAAG
AGATTGTCGGCGATTTCACTACGTCGATGTCGCCAACACTTGCCGAAGAAGTCACGCCGCAAAACGACGGTTCGGTGATT
ATTGATGGCACTGCCAACGTGCGGGAAATCAACAAAGCCTTTAACTGGCATCTACCGGAAGATGATGCCCGCACGGTTAA
TGGCGTCATTCTTGAGGCACTGGAAGAGATCCCTGTCGCAGGCACCCGCGTGCGTATTGGCGAGTACGATATAGATATTC
TCGACGTACAGGACAATATGATTAAGCAGGTAAAAGTTTTTCCTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAA

Upstream 100 bases:

>100_bases
GGAGTTTCCCCTGGAACACATTTCTACTACTACGTTGATCATTATTCTGATCATCATGGTGGTCATTTCAGCCTATTTTT
CCGGGTCCGAAACCGGAATG

Downstream 100 bases:

>100_bases
CGAAAACGGCCCTGCATTCGCATGCAGGGCCGTGAATTATTACGAAAACAGAAATTACGCTTTTGCTTTCGCTACAGTTA
CCATCGCCGCACGAATCGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAE
VLPKTIAALYPEKVAYPSSILLAPLQILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELRTIVHESRSQISRRNQ
DMLLSVLDLEKMTVDDIMVPRSEIIGIDINDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKE
TMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVI
IDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE

Sequences:

>Translated_398_residues
MTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAE
VLPKTIAALYPEKVAYPSSILLAPLQILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELRTIVHESRSQISRRNQ
DMLLSVLDLEKMTVDDIMVPRSEIIGIDINDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKE
TMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVI
IDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE
>Mature_397_residues
TLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEV
LPKTIAALYPEKVAYPSSILLAPLQILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELRTIVHESRSQISRRNQD
MLLSVLDLEKMTVDDIMVPRSEIIGIDINDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKET
MLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVII
DGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=360, Percent_Identity=25.8333333333333, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI94681046, Length=315, Percent_Identity=26.031746031746, Blast_Score=75, Evalue=2e-13,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=99.748743718593, Blast_Score=803, Evalue=0.0,
Organism=Escherichia coli, GI1790664, Length=406, Percent_Identity=21.6748768472906, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1786879, Length=250, Percent_Identity=26.4, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082033, Length=277, Percent_Identity=27.4368231046931, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788119, Length=235, Percent_Identity=29.7872340425532, Blast_Score=85, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 44757; Mature: 44626

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYG
CCCHHHHHHHHHHHCCCHHHHHHHHHHCHHHHEEEHEECCHHHHHHHHHHHHHHHHHHCC
DAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSILLAPLQILMMPLVWLLNAIT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RMLMRMMGIKTDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVP
HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
RSEIIGIDINDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKE
HHHEEEEECCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
TMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFT
HHHHHHHCEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHH
TSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVA
CCCCCHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
GTRVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE
CCEEEECCCCEEEEECCHHHHHHHHCCCCCHHHHHHCC
>Mature Secondary Structure 
TLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYG
CCHHHHHHHHHHHCCCHHHHHHHHHHCHHHHEEEHEECCHHHHHHHHHHHHHHHHHHCC
DAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSILLAPLQILMMPLVWLLNAIT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RMLMRMMGIKTDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVP
HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
RSEIIGIDINDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKE
HHHEEEEECCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
TMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFT
HHHHHHHCEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHH
TSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVA
CCCCCHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
GTRVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE
CCEEEECCCCEEEEECCHHHHHHHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]