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The map label for this gene is ypdH

Identifier: 218696030

GI number: 218696030

Start: 2740295

End: 2740621

Strand: Reverse

Name: ypdH

Synonym: EC55989_2683

Alternate gene names: 218696030

Gene position: 2740621-2740295 (Counterclockwise)

Preceding gene: 218696031

Following gene: 218696029

Centisome position: 53.17

GC content: 50.46

Gene sequence:

>327_bases
ATGAGTAAGAAACTGATTGCCTTATGTGCCTGCCCGATGGGCCTGGCTCACACTTTTATGGCCGCTCAGGCGCTGGAAGA
AGCGGCGGTAGAAGCCGGTTATGAAGTGAAAATTGAAACCCAGGGCGCGGACGGCATCCAGAATCGCCTGACGGCGCAGG
ATATCGCCGAAGCGACCATCATCATCCATTCCGTGGCAGTTACCCCGGAAGATAACGAACGTTTCGAATCACGCGACGTT
TATGAAATCACTTTGCAGGACGCAATTAAAAACGCTGTAGGCATCATCAAAGAAATCGAAGAGATGATTGCCTCTGAACA
ACAGTAA

Upstream 100 bases:

>100_bases
GATTAATTCTCCAGTAAATGCATTATTTGTCTGGTAACGGCGATTTGTTTTGCACGTTCATAATTTCACTCGTCAACTAT
CACTGAACGAGGAATTAACG

Downstream 100 bases:

>100_bases
TATTCGACAGGGATAATTGTTATGGCCATTAAAAAACGCAGTGCAACCGTTGTGCCTGGCGCATCCGGTGCGGCAGCGGC
AGTTAAGAATCCGCAGGCCT

Product: putative enzyme IIB component of PTS

Products: NA

Alternate protein names: PTS system fructose-like EIIB component 1 [H]

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDV
YEITLQDAIKNAVGIIKEIEEMIASEQQ

Sequences:

>Translated_108_residues
MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDV
YEITLQDAIKNAVGIIKEIEEMIASEQQ
>Mature_107_residues
SKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVY
EITLQDAIKNAVGIIKEIEEMIASEQQ

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane [H]

COG id: COG1445

COG function: function code G; Phosphotransferase system fructose-specific component IIB

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIB type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1788730, Length=108, Percent_Identity=99.0740740740741, Blast_Score=216, Evalue=4e-58,
Organism=Escherichia coli, GI1790387, Length=101, Percent_Identity=45.5445544554455, Blast_Score=97, Evalue=3e-22,
Organism=Escherichia coli, GI87082348, Length=100, Percent_Identity=40, Blast_Score=89, Evalue=6e-20,
Organism=Escherichia coli, GI1786951, Length=103, Percent_Identity=34.9514563106796, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1788492, Length=90, Percent_Identity=40, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1790390, Length=104, Percent_Identity=31.7307692307692, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013011
- InterPro:   IPR003501
- InterPro:   IPR003353 [H]

Pfam domain/function: PF02302 PTS_IIB [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 11764; Mature: 11632

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: PS51099 PTS_EIIB_TYPE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATI
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH
IIHSVAVTPEDNERFESRDVYEITLQDAIKNAVGIIKEIEEMIASEQQ
HHHEEEECCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATI
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH
IIHSVAVTPEDNERFESRDVYEITLQDAIKNAVGIIKEIEEMIASEQQ
HHHEEEECCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]