| Definition | Escherichia coli 55989, complete genome. |
|---|---|
| Accession | NC_011748 |
| Length | 5,154,862 |
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The map label for this gene is ypdD
Identifier: 218696026
GI number: 218696026
Start: 2734369
End: 2736864
Strand: Reverse
Name: ypdD
Synonym: EC55989_2679
Alternate gene names: 218696026
Gene position: 2736864-2734369 (Counterclockwise)
Preceding gene: 218696027
Following gene: 218696022
Centisome position: 53.09
GC content: 55.05
Gene sequence:
>2496_bases ATGTTAACGATTCAATTTCTCTGTCCTTTGCCTAACGGTCTGCATGCTCGTCCGGCGTGGGAACTTAAAGAACAGTGCAG CCAGTGGCAAAGTGAAGTCACCTTTATTAACCATCGCCAGAACGCAAAGGCCGATGCGAAAAGTTCGCTGGCGCTGATTG GCACCGGCACCCTATTTAATGACAGTTGCAGCCTGAACATTAGCGGCAGCGATGAAGAGCAGGCGCGGCGCGTGCTGGAA GAGTACATCCAGGTGCGCTTTATCGACAGCGACAGCGTTCAGCCTACGCAGGCAGAACTGACGGCGCATCCGCTGCCGCG TTCATTAAGCCGCCTTAACCCGGATTTACTGTACGGCAATGTGCTGGCAAGCGGCGTCGGCGTGGGTACGCTGACCCTGT TACAAAGCGACAGCCTCGACAGTTATCGGGCAATCCCCGCCAGTGCGCAAGATTCCACCCGGCTGGAGCACAGCCTGGCA ACGCTTGCCGAGCAACTGAACCAGCAATTGCGTGAGCGTGACGGCGAAAGCAAAACTATCCTCAGCGCTCATTTGTCGCT GATTCAGGATGATGAATTTGCAGGCAATATCCGTCGCCTGATGACAGAACAGCATCAGGGACTGGGGGCGGCGATCATCA GCAATATGGAGCAGGTTTGCGCCAAGCTTTCTGCTTCTGCCAGCGATTATCTGCGCGAACGTGTTAGCGACATTCGCGAT ATTAGCGAACAGTTGCTGCATATCACCCGGCCGGAACTGAAGCCGCGCAACAATCTGGTGCTGGAAAAACCGACCATTCT GGTGGCTGAAGATTTAACCCCAAGCCAGTTTTTGAGCCTTGATTTGAAAAATCTTGCGGGCATGATTCTGGAGAAAACCG GGCGCACCTCGCATACCCTGATTCTGGCCCGCGCCTCGGCGATCCCGGTACTGAGCGGCCTGCCGCTGGATGCGATTGCC CGTTATGCCGGGCAACCGGCGGTGCTTGACGCCCAGTGCGGCGTGCTGGCGATTAACCCGAATGACGCGGTGAGCGGTTA TTATCAGGTTGCGCAGACGCTGGCGGATAAACGCCAAAAACAACAGGCGCAGGCTGCCGCGCAGCTGGCCTATTCCCGTG ATAACAAGCGTATTGATATCGCGGCGAATATTGGCACCGCTCTGGAAGCACCAGGCGCGTTTGCCAACGGCGCGGAAGGC GTCGGGCTGTTCCGTACCGAAATGCTGTATATGGATCGTGACAGCGCGCCGGACGAGCAGGAGCAATTTGAAGCCTACCA GCAGGTGCTACTGGCAGCGGGCGACAAGCCGATTATCTTCCGCACAATGGACATCGGAGGCGATAAAAGCATTCCTTATC TGAATATTCCCCAGGAAGAGAACCCGTTCCTCGGCTATCGCGCGGTACGTATTTACCCGGAATTTGCTGCCCTGTTCCGC ACTCAACTACGGGCGATTTTGCGCGCTGCCAGTTTTGGCAACGCCCAGTTGATGATCCCGATGGTTCACAGCCTCGATCA GATCTTATGGGTGAAGGGCGAGATCCAAAAAGCGATCGTTGAGCTTAAGCGCGATGGCCTGCGTCATGCAGAGACGATTA CTCTGGGTATCATGGTGGAAGTGCCGTCGGTGTGTTACATCATCGACCACTTCTGCGATGAGGTCGATTTCTTCAGTATC GGTTCTAACGATATGACCCAGTATCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGCCGCTGTATAACCCGATTAC GCCATCGTTCCTGCGCATGTTGCAGCAGATTGTTACCACTGCGCATCAGCGGGGCAAATGGGTAGGCATTTGCGGTGAAC TGGGCGGTGAAAGCCGTTATCTGCCGCTACTGCTTGGGCTGGGCCTGGATGAGCTGAGTATGAGTAGCCCGCGTATTCCG GCGGTGAAAAGCCAGCTTCGTCAACTGGATAGCGAGGCGTGTCGGGAACTGGCGCGTCAGGCATGTGAATGCCGCAGTGC GCAGGAAATTGAAGCGTTACTCACCGCCTTTACGCCGGAAGAAGACGTTCGCCCACTGCTGGCGCTGGAGAATATCTTTG TTGATCAGGATTTTAGCAATAAAGAGCAGGCGATCCAGTTCCTGTGCGGCAACCTCGGCGTTAACGGGCGCACTGAACAT CCGTTTGAGCTGGAAGAAGATGTCTGGCAGCGGGAAGAGATTGTTACCACCGGCGTTGGTTTTGGCGTAGCGATCCCGCA CACCAAATCTCAGTGGATCCGTCATTTCAGTATCAGCATTGCCCGGCTGGCGAAACCGATTGACTGGCAGTCAGAAATGG GCGAAGTCGAACTGGTGATCATGCTGACGCTGGGTGCTAACGAAGGGATGAATCATGTGAAAGTCTTCTCGCAGCTGGCG CGTAAACTGGTGAATAAAAACTTCCGCCAGTCGTTGTTTGCCGCGCAAGATGCACAAAGTATCCTGACGCTGCTGGAAAC AGAATTAACCTTCTGA
Upstream 100 bases:
>100_bases GATGCAGCAACTTTTATCTGCCCTTATTCAACGTCTTACCCGTGAGACGGTTGTTCAACTGACGGATTTCAGATGATCTC CTGATTAACCCGGAGCGGTT
Downstream 100 bases:
>100_bases CGTTAGCCCTGAAAACGGGCGCTGTACTCTCCCGGCGTCAGACCAAACTGACGCCGGAAAACGCGACAAAAATAGTCGCT ATCCGGAAAACCGCAACGCT
Product: putative fused PTS enzymes (multiphosphoryl transfer protein): Hpr component ; enzyme I component ; enzyme IIA component
Products: NA
Alternate protein names: MTP; Phosphoenolpyruvate-protein phosphotransferase; Phosphotransferase system enzyme I; Phosphocarrier protein HPr; Protein H; Fructose-like phosphotransferase enzyme IIA component; PTS system fructose-like EIIA component [H]
Number of amino acids: Translated: 831; Mature: 831
Protein sequence:
>831_residues MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEVTFINHRQNAKADAKSSLALIGTGTLFNDSCSLNISGSDEEQARRVLE EYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGNVLASGVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLA TLAEQLNQQLRERDGESKTILSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQVCAKLSASASDYLRERVSDIRD ISEQLLHITRPELKPRNNLVLEKPTILVAEDLTPSQFLSLDLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIA RYAGQPAVLDAQCGVLAINPNDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEG VGLFRTEMLYMDRDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAALFR TQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSI GSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIP AVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEH PFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHFSISIARLAKPIDWQSEMGEVELVIMLTLGANEGMNHVKVFSQLA RKLVNKNFRQSLFAAQDAQSILTLLETELTF
Sequences:
>Translated_831_residues MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEVTFINHRQNAKADAKSSLALIGTGTLFNDSCSLNISGSDEEQARRVLE EYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGNVLASGVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLA TLAEQLNQQLRERDGESKTILSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQVCAKLSASASDYLRERVSDIRD ISEQLLHITRPELKPRNNLVLEKPTILVAEDLTPSQFLSLDLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIA RYAGQPAVLDAQCGVLAINPNDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEG VGLFRTEMLYMDRDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAALFR TQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSI GSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIP AVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEH PFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHFSISIARLAKPIDWQSEMGEVELVIMLTLGANEGMNHVKVFSQLA RKLVNKNFRQSLFAAQDAQSILTLLETELTF >Mature_831_residues MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEVTFINHRQNAKADAKSSLALIGTGTLFNDSCSLNISGSDEEQARRVLE EYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGNVLASGVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLA TLAEQLNQQLRERDGESKTILSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQVCAKLSASASDYLRERVSDIRD ISEQLLHITRPELKPRNNLVLEKPTILVAEDLTPSQFLSLDLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIA RYAGQPAVLDAQCGVLAINPNDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEG VGLFRTEMLYMDRDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAALFR TQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSI GSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIP AVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEH PFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHFSISIARLAKPIDWQSEMGEVELVIMLTLGANEGMNHVKVFSQLA RKLVNKNFRQSLFAAQDAQSILTLLETELTF
Specific function: Multifunctional protein that includes general (non sugar-specific) and sugar-specific components of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylatio
COG id: COG1080
COG function: function code G; Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria)
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIA type-2 domain [H]
Homologues:
Organism=Escherichia coli, GI1788726, Length=831, Percent_Identity=99.2779783393502, Blast_Score=1694, Evalue=0.0, Organism=Escherichia coli, GI48994992, Length=834, Percent_Identity=44.8441247002398, Blast_Score=698, Evalue=0.0, Organism=Escherichia coli, GI1788756, Length=575, Percent_Identity=39.1304347826087, Blast_Score=393, Evalue=1e-110, Organism=Escherichia coli, GI1789193, Length=516, Percent_Identity=32.7519379844961, Blast_Score=254, Evalue=2e-68, Organism=Escherichia coli, GI1787994, Length=422, Percent_Identity=26.0663507109005, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1786951, Length=136, Percent_Identity=27.2058823529412, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI226510935, Length=297, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008279 - InterPro: IPR006318 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR016152 - InterPro: IPR002178 - InterPro: IPR005698 - InterPro: IPR000032 - InterPro: IPR004715 - InterPro: IPR008731 - InterPro: IPR015813 [H]
Pfam domain/function: PF05524 PEP-utilisers_N; PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF00381 PTS-HPr; PF00359 PTS_EIIA_2 [H]
EC number: =2.7.3.9 [H]
Molecular weight: Translated: 92205; Mature: 92205
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS51094 PTS_EIIA_TYPE_2 ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEVTFINHRQNAKADAKSSLALIGTGTLFN CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECEEEC DSCSLNISGSDEEQARRVLEEYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGN CCEEEEECCCCHHHHHHHHHHHHHEEEECCCCCCCCHHHHHCCCCHHHHHHCCHHHEEHH VLASGVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLATLAEQLNQQLRERDGESKTI HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQVCAKLSASASDYLRERVSDIRD HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH ISEQLLHITRPELKPRNNLVLEKPTILVAEDLTPSQFLSLDLKNLAGMILEKTGRTSHTL HHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE ILARASAIPVLSGLPLDAIARYAGQPAVLDAQCGVLAINPNDAVSGYYQVAQTLADKRQK EEEECCCCCCCCCCCHHHHHHHCCCCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHH QQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEGVGLFRTEMLYMDRDSAPDEQ HHHHHHHHHHHCCCCCEEEEEECCCCHHCCCCCCCCCCCCCCHHHHHEEEECCCCCCCHH EQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAALFR HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEECHHHHHHHH TQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVE HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEEE VPSVCYIIDHFCDEVDFFSIGSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTT CCHHHHHHHHHHCCCCEEECCCCHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHH AHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQ HHHCCCEEEEECCCCCCCCEEHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH ACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEH HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC PFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHFSISIARLAKPIDWQSEMGEVELVI CCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCEEEEE MLTLGANEGMNHVKVFSQLARKLVNKNFRQSLFAAQDAQSILTLLETELTF EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEVTFINHRQNAKADAKSSLALIGTGTLFN CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECEEEC DSCSLNISGSDEEQARRVLEEYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGN CCEEEEECCCCHHHHHHHHHHHHHEEEECCCCCCCCHHHHHCCCCHHHHHHCCHHHEEHH VLASGVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLATLAEQLNQQLRERDGESKTI HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQVCAKLSASASDYLRERVSDIRD HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH ISEQLLHITRPELKPRNNLVLEKPTILVAEDLTPSQFLSLDLKNLAGMILEKTGRTSHTL HHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE ILARASAIPVLSGLPLDAIARYAGQPAVLDAQCGVLAINPNDAVSGYYQVAQTLADKRQK EEEECCCCCCCCCCCHHHHHHHCCCCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHH QQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEGVGLFRTEMLYMDRDSAPDEQ HHHHHHHHHHHCCCCCEEEEEECCCCHHCCCCCCCCCCCCCCHHHHHEEEECCCCCCCHH EQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAALFR HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEECHHHHHHHH TQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVE HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEEE VPSVCYIIDHFCDEVDFFSIGSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTT CCHHHHHHHHHHCCCCEEECCCCHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHH AHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQ HHHCCCEEEEECCCCCCCCEEHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH ACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEH HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC PFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHFSISIARLAKPIDWQSEMGEVELVI CCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCEEEEE MLTLGANEGMNHVKVFSQLARKLVNKNFRQSLFAAQDAQSILTLLETELTF EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]