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The map label for this gene is ydhY

Identifier: 218695235

GI number: 218695235

Start: 1902480

End: 1903106

Strand: Reverse

Name: ydhY

Synonym: EC55989_1841

Alternate gene names: 218695235

Gene position: 1903106-1902480 (Counterclockwise)

Preceding gene: 218695236

Following gene: 218695234

Centisome position: 36.92

GC content: 49.44

Gene sequence:

>627_bases
ATGAACCCGGTTGATCGTCCACTATTAGATATTGGCTTAACGCGATTAGAATTCTTGCGTATATCAGGAAAAGGCCTTGC
TGGTCTAACAATTGCCCCTGCGTTACTGTCACTTTTGGGTTGCAAACAGGAAGATATTGATAGCGGCACAGTAGGGTTGA
TAAATACACCCAAAGGGGTGCTGGTGACCCAGCGAGCGCGATGCACGGGTTGCCACCGCTGTGAAATCTCTTGTACCAAC
TTCAACGATGGCTCAGTAGGGACATTCTTCTCCCGTATCAAAATCCACCGCAATTATTTCTTTGGCGACAACGGGGTTGG
CTCTGGCGGCGGCCTGTATGGCGATCTCAACTATACCGCGGACACCTGCCGTCAATGCAAAGAGCCGCAATGCATGAACG
TCTGCCCGATTGGTGCGATTACCTGGCAGCAGAAAGAAGGCTGTATTACCGTCGATCATAAACGCTGTATTGGCTGTAGC
GCCTGTACTACGGCATGCCCGTGGATGATGGCCACCGTAAATACCGAAAGTAAAAAATCCTCGAAATGTGTGTTATGCGG
TGAATGCGCAAACGCCTGCCCAACAGGGGCGTTAAAAATTATCGAGTGGAAAGATATTACTGTGTGA

Upstream 100 bases:

>100_bases
TATCTGGTGTTGGGGACAGAGTCAGCAGCGTATTAGTTGAATGCTTAATATCAGGCTGCTGAATTGTCAGCACTGTGTTT
GCGAAGAGGATGCGAAATAA

Downstream 100 bases:

>100_bases
ATCTTGCAAAGGAAAAAATCATGGCTAACGGTTGGACAGGTAATATATTAAGAGTCAATCTCACGACAGGAAATATTACC
CTCGAAGATTCCAGTAAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV

Sequences:

>Translated_208_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>Mature_208_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787963, Length=208, Percent_Identity=100, Blast_Score=427, Evalue=1e-121,
Organism=Escherichia coli, GI1787872, Length=150, Percent_Identity=32, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI226510944, Length=152, Percent_Identity=30.2631578947368, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787122, Length=150, Percent_Identity=30.6666666666667, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87082179, Length=163, Percent_Identity=26.9938650306748, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI2367245, Length=161, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082180, Length=156, Percent_Identity=30.1282051282051, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI2367345, Length=164, Percent_Identity=28.0487804878049, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789067, Length=174, Percent_Identity=28.735632183908, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1790326, Length=182, Percent_Identity=24.1758241758242, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1787478, Length=167, Percent_Identity=25.748502994012, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787749, Length=155, Percent_Identity=24.5161290322581, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDHY_ECO57 (P0AAL7)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A85775
- PIR:   E90926
- RefSeq:   NP_288108.1
- RefSeq:   NP_310408.1
- ProteinModelPortal:   P0AAL7
- SMR:   P0AAL7
- EnsemblBacteria:   EBESCT00000028334
- EnsemblBacteria:   EBESCT00000059525
- GeneID:   914273
- GeneID:   961645
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z2702
- KEGG:   ecs:ECs2381
- GeneTree:   EBGT00070000031697
- HOGENOM:   HBG726839
- OMA:   VIDEDEC
- ProtClustDB:   PRK09898
- BioCyc:   ECOL83334:ECS2381-MONOMER
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900

Pfam domain/function: PF00037 Fer4

EC number: NA

Molecular weight: Translated: 22367; Mature: 22367

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
10.6 %Cys+Met (Translated Protein)
8.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGV
CCCCCCHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCE
LVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTA
EEECCCCCCCCEEEEEEECCCCCCCHHHHHHEEEEEEEEEECCCCCCCCCCEEEECCCCH
DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKS
HHHHHCCCCCCCCCCCCCEEEEECCCCCEEECCCHHCCCHHHHHHCCEEEEEECCCCCCC
SKCVLCGECANACPTGALKIIEWKDITV
CCEEEECCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGV
CCCCCCHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCE
LVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTA
EEECCCCCCCCEEEEEEECCCCCCCHHHHHHEEEEEEEEEECCCCCCCCCCEEEECCCCH
DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKS
HHHHHCCCCCCCCCCCCCEEEEECCCCCEEECCCHHCCCHHHHHHCCEEEEEECCCCCCC
SKCVLCGECANACPTGALKIIEWKDITV
CCEEEECCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796