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The map label for this gene is ydhX

Identifier: 218695232

GI number: 218695232

Start: 1898974

End: 1899642

Strand: Reverse

Name: ydhX

Synonym: EC55989_1838

Alternate gene names: 218695232

Gene position: 1899642-1898974 (Counterclockwise)

Preceding gene: 218695233

Following gene: 218695231

Centisome position: 36.85

GC content: 50.07

Gene sequence:

>669_bases
ATGTCCTTCACTCGACGCAAATTTGTTCTGGGGATGGGAACAGTAATCTTTTTTACTGGTTCTGCGTCTTCTCTGTTAGC
GAACACGAGGCAAGAAAAGGAAGTTCGGTATGCCATGATTCATGACGAGTCACGGTGCAATGGCTGTAATATTTGCGCCC
GCGCATGCCGTAAAACTAACCACGTCCCCGCTCAGGGAAGCCGTTTATCGATAGCACACATTCCAGTCACCGATAACGAC
AACGAAACGCAGTATCACTTTTTTCGCCAGTCATGTCAGCACTGCGAAGATGCTCCGTGCATCGACGTATGCCCGACAGG
GGCGTCGTGGCGTGATGAGCAGGGGATCGTGCGGGTAGAAAAATCGCAGTGCATCGGCTGCAGTTATTGCATTGGCGCTT
GTCCGTACCAGGTTCGCTACCTTAACCCTGTCACTAAAGTGGCAGATAAATGTGATTTCTGCGCTGAGTCCCGACTGGCA
AAAGGCTTTCCGCCCATTTGCGTCAGCGCCTGTCCGGAACACGCATTGATCTTTGGTCGCGAAGATAGCCCAGAAATTCA
GGCGTGGTTGCAGGATAATAAATACTATCAATATCAGCTACCTGGTGCCGGGAAACCGCATCTGTATCGCCGGTTCGGTC
AACATTTGATTAAAAAGGAAAATGTATGA

Upstream 100 bases:

>100_bases
CGAATGGTTCGAGGTAGAGCAGTTTCAGAACCCCTGAAATTTCAGGGAGATGTCATGGATAGGGTGGACAGTTGCAGCCA
CTGCATTAGGGGATAATCAG

Downstream 100 bases:

>100_bases
ACCCGTCGCAACATGCTGAACAGTTTCAGAGCCAGTTAGCGAACTATGTGCCACAGTTCACTCCCGAATTTTGGCCGGTG
TGGTTGATCATTGCCGGAGT

Product: putative 4Fe-4S ferridoxin-type subunit of oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDND
NETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA
KGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Sequences:

>Translated_222_residues
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDND
NETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA
KGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>Mature_221_residues
SFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDN
ETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAK
GFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI226510944, Length=222, Percent_Identity=99.5495495495496, Blast_Score=465, Evalue=1e-132,
Organism=Escherichia coli, GI2367345, Length=213, Percent_Identity=49.7652582159624, Blast_Score=216, Evalue=8e-58,
Organism=Escherichia coli, GI1787122, Length=155, Percent_Identity=38.7096774193548, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787872, Length=152, Percent_Identity=38.8157894736842, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1789370, Length=215, Percent_Identity=30.6976744186047, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1790326, Length=240, Percent_Identity=27.5, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787749, Length=188, Percent_Identity=30.3191489361702, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789067, Length=158, Percent_Identity=35.4430379746835, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787963, Length=151, Percent_Identity=28.476821192053, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI2367245, Length=144, Percent_Identity=36.8055555555556, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787740, Length=90, Percent_Identity=35.5555555555556, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787478, Length=90, Percent_Identity=35.5555555555556, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788811, Length=148, Percent_Identity=33.7837837837838, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25080; Mature: 24949

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
7.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTN
CCCCHHHHHEECCEEEEEECCCHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHCC
HVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVE
CCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEC
KSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGR
CCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEECC
EDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCCHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTN
CCCHHHHHEECCEEEEEECCCHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHCC
HVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVE
CCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEC
KSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGR
CCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEECC
EDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCCHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]