Click here to switch to the map view.

The map label for this gene is ydfE [H]

Identifier: 218695138

GI number: 218695138

Start: 1796175

End: 1798646

Strand: Direct

Name: ydfE [H]

Synonym: EC55989_1739

Alternate gene names: 218695138

Gene position: 1796175-1798646 (Clockwise)

Preceding gene: 218695137

Following gene: 218695139

Centisome position: 34.84

GC content: 48.67

Gene sequence:

>2472_bases
ATGAGTAAAGTCTTTATTTGCGCCGCTATTCCTGACGAACTGGCAACAAGGGAAGAAGGCGCTGTGGCTGTAGCCACAGC
CATTGAAGCTGGCGACGAACGCCGTGCTCGAGCAAAATTTCACTGGCAATTCCTGGAACATTATCCGGCTGCTCAGGACT
GCGCTTATAAATTTATTGTCTGCGAGGATAAACCTGGCATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATG
CAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGATTGAGACTGAATCCGATCCGATGAACGTCACTTTTGA
CAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTA
GCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTT
AACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGA
AATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATACACGTCTGTTGTTG
ATCTCGCACGCGCCAGAGCCAATCAACAGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCAT
CGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTACGCTCTCTGGCCTGGTGATGTGGATGCCGGAAA
CATTGACGGCAGCATCCATCGCTGGGCAAAAAAAGAAGTTATCGACAACGACCGCGAAGACTGGAAGCGTATCTCGGCAT
CAATGCGCAAACAGCCTGATGCCCTTCGCTACGACCGCCAGACTATTTTTGGCCTTGTCCGTGAGCGTCCGATCGACATT
CACAAAGATCCCGTAGCACTGAACAAATATATCTGCGAATACCTGACGACAAAGGGCGTGTTTGAGAATGAAGAAACAGA
CCTGGGCACTGTTGATGTTCTCCAGTCATCAGAAACACAAACTGATGCAGTGGAAACTGAGGTATCTGATATCCCAAAAA
ATGAAACCGCGCCGGAAGCTGAACCATCTGTAGAGCGTGAGGGGCCGTTCTATTTCCTCTTCGCAGATAAGGACGGAGAA
AAATACGGTCGCGCAAACAAACTTTCTGGTCTGGATAAGGCACTGGCTGCTGGCGCCACTGAAATCACAAAAGAAGAATA
TTTTGCCCGAAAAAATGGCACATACACGGGCTTACCGCAAAATGTAGATACCGCTGAAGATTCAGAACAACCAGAGCCGA
TAAAAGTTACCGCTGACGAAGTAAACACAATTATGCAGGCAGCCAATATCAGCCAGCCTGACGCTGATAAGTTGCTTGCT
GCATCACGTGGTGAATTTGTTGAAGGGATTAGTGACCCGAATGATCCGAAATGGGTTAAGGGGATCCAGACCCGCGATTC
TGTGAACCAGAACCAGCATGAATCGGAACGGAACTACCAAAAAGCGGAACAAAACAGTCCAAATGCGTTACAAAACGAGC
CAGAAACGAAACAGCCTGAACCAGTAGCGCAACAGGAAGTGGAAAAAGTCTGCACCGCCTGCGGTCAGACCGGCGGCGGC
AACTGCCCTGATTGTGGCGCGGTGATGGGCGACGCAACATACCAGGAAACATTCGATGAAGAGTATCAGGTTGAAGTTCA
GGAAGATGATCCGGAGGAAATGCAAGGCGCTGAACATCCACACAAGGAGAACACTGGCGGCAATCAGCATCACAATAGCG
ATAATGAAACTGGCGAGACGGCAGATCACCCAATTAAGGTGAACGGTCATCACGAAATCACATCCACCAGCAGGACGTGT
GACCATCTAATGATCGACCTTGAAACCATGGGAAAAAATCCTGATGCCCCGATCATCTCAATAGGTGCAATATTTTTCGA
TCCGCAAACCGGAGATATGGGACCGGAATTTAGTAAGACTATCGATCTGGAAACTGCTGGCGGAGTCATTGATCGGGACA
CCATTAAATGGTGGCTTAAGCAATCACGCGAAGCGCAATCTGCCATTATGACCGATGAAATCCCGTTAGATGATGCTCTG
TTACAATTGCGGGAATTTATCGACGAAAACTCCGGTGAATTTTTTGTTCAGGTTTGGGGAAATGGAGCCAACTTCGACAA
CACGATTTTGCGCCGTTCATACGAACGGCAGGAGATCCCCTGCCCGTGGCGTTACTACAACGATCGCGATGTACGCACAA
TCGTTGAGCTGGGGAAAGCCATAGACTTCGATGCCAGAACGGCTATTCCATTCGAAGGTGAGCGCCATAATGCACTTGAT
GACGCCCGTTACCAGGCAAAATACGTTTCAGTTATCTGGCAAAAACTGATCCCGAGTCAGGCTGATTCTTAA

Upstream 100 bases:

>100_bases
TCTTTAAAACAGTTCCGTAATAAATATCCGGTTTCATTCTTATATGCCAGCAATGGCAGGGATTTGTTCATCCTTAAATC
TGTCATGAGGTTAAAACAAA

Downstream 100 bases:

>100_bases
TGTTCAACTGTCGCCGGTTGTGACTGGTATTCTGCAACCGGCGCTCGTCTGATGTAAGAGATAAAGAAATCGATGAGCGA
AGTAATCATGATTGTCTCTC

Product: putative exonuclease from phage origin

Products: NA

Alternate protein names: ORF6 [H]

Number of amino acids: Translated: 823; Mature: 822

Protein sequence:

>823_residues
MSKVFICAAIPDELATREEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFIVCEDKPGIPRPALDSWDAEYM
QENRWDEESASFVPIETESDPMNVTFDKLAPEVQNAVMVKFDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEV
NAMYPELKLHAIGWVKHKCIPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARANQQYTENSTGKISPVIAAIH
REYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWAKKEVIDNDREDWKRISASMRKQPDALRYDRQTIFGLVRERPIDI
HKDPVALNKYICEYLTTKGVFENEETDLGTVDVLQSSETQTDAVETEVSDIPKNETAPEAEPSVEREGPFYFLFADKDGE
KYGRANKLSGLDKALAAGATEITKEEYFARKNGTYTGLPQNVDTAEDSEQPEPIKVTADEVNTIMQAANISQPDADKLLA
ASRGEFVEGISDPNDPKWVKGIQTRDSVNQNQHESERNYQKAEQNSPNALQNEPETKQPEPVAQQEVEKVCTACGQTGGG
NCPDCGAVMGDATYQETFDEEYQVEVQEDDPEEMQGAEHPHKENTGGNQHHNSDNETGETADHPIKVNGHHEITSTSRTC
DHLMIDLETMGKNPDAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDEIPLDDAL
LQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQEIPCPWRYYNDRDVRTIVELGKAIDFDARTAIPFEGERHNALD
DARYQAKYVSVIWQKLIPSQADS

Sequences:

>Translated_823_residues
MSKVFICAAIPDELATREEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFIVCEDKPGIPRPALDSWDAEYM
QENRWDEESASFVPIETESDPMNVTFDKLAPEVQNAVMVKFDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEV
NAMYPELKLHAIGWVKHKCIPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARANQQYTENSTGKISPVIAAIH
REYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWAKKEVIDNDREDWKRISASMRKQPDALRYDRQTIFGLVRERPIDI
HKDPVALNKYICEYLTTKGVFENEETDLGTVDVLQSSETQTDAVETEVSDIPKNETAPEAEPSVEREGPFYFLFADKDGE
KYGRANKLSGLDKALAAGATEITKEEYFARKNGTYTGLPQNVDTAEDSEQPEPIKVTADEVNTIMQAANISQPDADKLLA
ASRGEFVEGISDPNDPKWVKGIQTRDSVNQNQHESERNYQKAEQNSPNALQNEPETKQPEPVAQQEVEKVCTACGQTGGG
NCPDCGAVMGDATYQETFDEEYQVEVQEDDPEEMQGAEHPHKENTGGNQHHNSDNETGETADHPIKVNGHHEITSTSRTC
DHLMIDLETMGKNPDAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDEIPLDDAL
LQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQEIPCPWRYYNDRDVRTIVELGKAIDFDARTAIPFEGERHNALD
DARYQAKYVSVIWQKLIPSQADS
>Mature_822_residues
SKVFICAAIPDELATREEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFIVCEDKPGIPRPALDSWDAEYMQ
ENRWDEESASFVPIETESDPMNVTFDKLAPEVQNAVMVKFDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEVN
AMYPELKLHAIGWVKHKCIPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARANQQYTENSTGKISPVIAAIHR
EYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWAKKEVIDNDREDWKRISASMRKQPDALRYDRQTIFGLVRERPIDIH
KDPVALNKYICEYLTTKGVFENEETDLGTVDVLQSSETQTDAVETEVSDIPKNETAPEAEPSVEREGPFYFLFADKDGEK
YGRANKLSGLDKALAAGATEITKEEYFARKNGTYTGLPQNVDTAEDSEQPEPIKVTADEVNTIMQAANISQPDADKLLAA
SRGEFVEGISDPNDPKWVKGIQTRDSVNQNQHESERNYQKAEQNSPNALQNEPETKQPEPVAQQEVEKVCTACGQTGGGN
CPDCGAVMGDATYQETFDEEYQVEVQEDDPEEMQGAEHPHKENTGGNQHHNSDNETGETADHPIKVNGHHEITSTSRTCD
HLMIDLETMGKNPDAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDEIPLDDALL
QLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQEIPCPWRYYNDRDVRTIVELGKAIDFDARTAIPFEGERHNALDD
ARYQAKYVSVIWQKLIPSQADS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787612, Length=371, Percent_Identity=38.0053908355795, Blast_Score=210, Evalue=4e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 92822; Mature: 92690

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVFICAAIPDELATREEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFIV
CCCEEEEEECCHHHHCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHCCCHHHCEEEEEE
CEDKPGIPRPALDSWDAEYMQENRWDEESASFVPIETESDPMNVTFDKLAPEVQNAVMVK
ECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCEEHHHHCHHHCCEEEEE
FDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEVNAMYPELKLHAIGWVKHKCI
EECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHCC
PGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARANQQYTENSTGKISPVIAAIH
CCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHH
REYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWAKKEVIDNDREDWKRISASMRKQPD
HHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH
ALRYDRQTIFGLVRERPIDIHKDPVALNKYICEYLTTKGVFENEETDLGTVDVLQSSETQ
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCH
TDAVETEVSDIPKNETAPEAEPSVEREGPFYFLFADKDGEKYGRANKLSGLDKALAAGAT
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHCCCH
EITKEEYFARKNGTYTGLPQNVDTAEDSEQPEPIKVTADEVNTIMQAANISQPDADKLLA
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCHHHHHH
ASRGEFVEGISDPNDPKWVKGIQTRDSVNQNQHESERNYQKAEQNSPNALQNEPETKQPE
HCCCHHHHCCCCCCCCHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PVAQQEVEKVCTACGQTGGGNCPDCGAVMGDATYQETFDEEYQVEVQEDDPEEMQGAEHP
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHCCCCEEEEECCCCHHHHCCCCCC
HKENTGGNQHHNSDNETGETADHPIKVNGHHEITSTSRTCDHLMIDLETMGKNPDAPIIS
CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCHHCHHHHEEEHHHCCCCCCCCEEE
IGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDEIPLDDAL
EEEEEECCCCCCCCCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQEIPCPWRYYNDRDVRTIVELGKA
HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
IDFDARTAIPFEGERHNALDDARYQAKYVSVIWQKLIPSQADS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKVFICAAIPDELATREEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFIV
CCEEEEEECCHHHHCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHCCCHHHCEEEEEE
CEDKPGIPRPALDSWDAEYMQENRWDEESASFVPIETESDPMNVTFDKLAPEVQNAVMVK
ECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCEEHHHHCHHHCCEEEEE
FDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEVNAMYPELKLHAIGWVKHKCI
EECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHCC
PGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARANQQYTENSTGKISPVIAAIH
CCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHH
REYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWAKKEVIDNDREDWKRISASMRKQPD
HHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH
ALRYDRQTIFGLVRERPIDIHKDPVALNKYICEYLTTKGVFENEETDLGTVDVLQSSETQ
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCH
TDAVETEVSDIPKNETAPEAEPSVEREGPFYFLFADKDGEKYGRANKLSGLDKALAAGAT
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHCCCH
EITKEEYFARKNGTYTGLPQNVDTAEDSEQPEPIKVTADEVNTIMQAANISQPDADKLLA
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCHHHHHH
ASRGEFVEGISDPNDPKWVKGIQTRDSVNQNQHESERNYQKAEQNSPNALQNEPETKQPE
HCCCHHHHCCCCCCCCHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PVAQQEVEKVCTACGQTGGGNCPDCGAVMGDATYQETFDEEYQVEVQEDDPEEMQGAEHP
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHCCCCEEEEECCCCHHHHCCCCCC
HKENTGGNQHHNSDNETGETADHPIKVNGHHEITSTSRTCDHLMIDLETMGKNPDAPIIS
CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCHHCHHHHEEEHHHCCCCCCCCEEE
IGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDEIPLDDAL
EEEEEECCCCCCCCCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQEIPCPWRYYNDRDVRTIVELGKA
HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
IDFDARTAIPFEGERHNALDDARYQAKYVSVIWQKLIPSQADS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2477663; 9097039; 9278503 [H]