Click here to switch to the map view.

The map label for this gene is ydeJ

Identifier: 218695080

GI number: 218695080

Start: 1747152

End: 1747670

Strand: Direct

Name: ydeJ

Synonym: EC55989_1678

Alternate gene names: 218695080

Gene position: 1747152-1747670 (Clockwise)

Preceding gene: 218695077

Following gene: 218695082

Centisome position: 33.89

GC content: 50.1

Gene sequence:

>519_bases
GTGAACATTAATAGCGATAAAATTGTACAACTTGCAGATACCGACACTATTGAAAACCTGACATCCGCGTTGAGTCAAAG
ACTTATCGCGGATCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCAGCTG
AAGATACACCCAAATTTTACGGTGCAGGCTTTGTTACTTTCACCGATCAGGCAAAGATGAAAATCCTCAGCGTAAGCCAG
CAATCTCTTGAACGATATTCTGCGGTGAGTGAGAAAGTGGCAGCAGAAATGGCAACCGGTGCCATAGAGCGTGCGGATGC
TGATGTCAGTATTGCCATTACCGGCTACGGCGGACCGGAGGGCGGTGAAGATGGTACGCCAGCGGGTACCGTCTGGTTCG
CGTGGCATATTAAAGGCCAGACCTATACTGCGGTTATGCATTTTGCTGGCGACTGCGAAACGGTATTAGCTTTAGCGGTG
AGGTTTGCCCTCGCCCAGCTGCTGCAATTACTGCTATAA

Upstream 100 bases:

>100_bases
TTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTGGACGAGCATACAGAAAAAGCAAATCACCTTTACATAT
AAAAGCGTGGACAAAAAACA

Downstream 100 bases:

>100_bases
CCAGGCTGGCCTGGCGATATCTCCAGGACAGCCATTGGTGGTGTTTATATGTTCAAGCCACGATGTTGCAGCATCGGCAT
AATTTGAGGAGCCTTACCGC

Product: competence damage-inducible protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MNINSDKIVQLADTDTIENLTSALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFYGAGFVTFTDQAKMKILSVSQ
QSLERYSAVSEKVAAEMATGAIERADADVSIAITGYGGPEGGEDGTPAGTVWFAWHIKGQTYTAVMHFAGDCETVLALAV
RFALAQLLQLLL

Sequences:

>Translated_172_residues
MNINSDKIVQLADTDTIENLTSALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFYGAGFVTFTDQAKMKILSVSQ
QSLERYSAVSEKVAAEMATGAIERADADVSIAITGYGGPEGGEDGTPAGTVWFAWHIKGQTYTAVMHFAGDCETVLALAV
RFALAQLLQLLL
>Mature_172_residues
MNINSDKIVQLADTDTIENLTSALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFYGAGFVTFTDQAKMKILSVSQ
QSLERYSAVSEKVAAEMATGAIERADADVSIAITGYGGPEGGEDGTPAGTVWFAWHIKGQTYTAVMHFAGDCETVLALAV
RFALAQLLQLLL

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1787818, Length=172, Percent_Identity=98.2558139534884, Blast_Score=346, Evalue=5e-97,
Organism=Escherichia coli, GI1789052, Length=163, Percent_Identity=37.4233128834356, Blast_Score=108, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 18211; Mature: 18211

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINSDKIVQLADTDTIENLTSALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFY
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHH
GAGFVTFTDQAKMKILSVSQQSLERYSAVSEKVAAEMATGAIERADADVSIAITGYGGPE
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
GGEDGTPAGTVWFAWHIKGQTYTAVMHFAGDCETVLALAVRFALAQLLQLLL
CCCCCCCCCEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNINSDKIVQLADTDTIENLTSALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFY
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHH
GAGFVTFTDQAKMKILSVSQQSLERYSAVSEKVAAEMATGAIERADADVSIAITGYGGPE
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
GGEDGTPAGTVWFAWHIKGQTYTAVMHFAGDCETVLALAVRFALAQLLQLLL
CCCCCCCCCEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383113; 9097039; 9278503 [H]