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The map label for this gene is ydbD

Identifier: 218694948

GI number: 218694948

Start: 1583680

End: 1585986

Strand: Direct

Name: ydbD

Synonym: EC55989_1538

Alternate gene names: 218694948

Gene position: 1583680-1585986 (Clockwise)

Preceding gene: 218694947

Following gene: 218694949

Centisome position: 30.72

GC content: 43.17

Gene sequence:

>2307_bases
ATGTTTAAGGCCAGGATTTGCGGCTGGATAGGTTTACTTCCCCTGTTTATGCTGAGTCTTCCAGTACAGGCGGAACTTCG
ATGTGTTGCAAATACAGTTGATATTGAACCATTTTTTTCTGCGGCTACCGCTGAAGATAAACAACAAGTTGAACAAGCTA
TCAACAGTAGCGTGAATCTTGTCCCCTTCGGTTTATCTGCATCGGACTGGAAAGTGCATCGTGGCGATTTAGTGGTAGAA
GGTAATATAGAGAGTAATCAAAAATTGATTGTTCTTGGTAATTTGACAGTCAAAGGTAATATTTCCACTTTCTCTCTTTC
TAATCCATGGGTTATTCTCGGTAACGTGACGGCAACGAATATAGTTACGGATTCACCACTGTTAATTACCGGTTCGATAA
ATGCAAGTGGACTGGTATTTATCGACTCATATTACGATAATCCGTCTACGATTAAGGGGAGTATTAATGCGCGTGGGATA
TTTATCAATGACATAATTGCACCTATTGTTGCGTCTTCGACAAATAGTGAATTCATGGTCCGTGCGAGTGACAAAAATGA
CACTGAAAATGTCAAAAAAGCGCTGATGATAATAAATCCTGATGCATATTATTGGGGTCTAATAAATGATGAAGATGCTC
TGAAAGAAATTTTTAAGCGAAGCAATATTCGCATGGCAGGGAATGTCTGTAATCAGATGAAAAAAGAAGCGCTGTTTCGC
CCTAAGCCTTCTCCTGAGTTAGTGCAGGAATTGCAAATGCTGGATGAAGGCAACGTTGCTGCATTTGAAGGACGAGATAT
TGCGACATTTGATCTTGCCATAATCCGAACTCTCCCAAGGCTTAAAGGAATTTCAGCTAACCTACGCAAACAACTTATTA
ATAGCAATGATGAACAAACGATTGAAAGTATGGCGAGATATATGCCTGACAATGAGATTCTGGAGTTGACCGATCAGCAA
TTGGGTTACCAGCCTGTTGTTCTGGGGTTGCTCGACCGTGAACCGCTCTCTGTCGAAATAATGACGCGAATGAGTCGTCT
ACCTGATGGTGTCGGTCCGTTGAATCTTGCGCTACGTGAAAATCTCCCTCTGGATATCGTAATGACTCTGGCGAAAAGAG
ATTGGGATATGATCATTCAGGAGCTTTATAAAGATGCGTGGTTATTGCCTGAATCCATTATTGATGGCTATATCCGCAGT
GATGATTCCTCTATTCGTCAGGTCGGTGCTGGAGGACAACTCACCTACAATCAGGCAATGCAGTTGGCGAACGATTCATC
AAACAATGTTGTCACAAGCTTAGCGTTCAAGCTGGCAGAGATGAAACACCATGGTCAATTATTGCGGATGACGCCACAAG
AGAGTGACAAAGTTGCAGCCTATTTATACCAAAAATTCGAGAATGACGATGATCTAATACGTGTGTTATTTTTAGCATTG
CCAGATAACTTACAGTTTAATTTTGTTAAAAGGATGGAGAAAAAATCCCCTGCCTACTTTTGCTGTCGGGATATGCAGGT
AATTCACTCTGACGCTGCTCTACAACGGTTATTGACACGTTTCAACGATCCTGAGGGGTGGAGTAATCTGGCGAAAAATC
AGTATCTGAGCACGTCGATGAAACAAAAAATTTGGCAACGTGCTTTATCGCATCGGAAAAATAATCCGAAAGCAGATTCA
GCTGCGTATGAAACCAGCGCTGATATGATTTTGTCTGAGCTTATCAGCCACGGTGAAGTTGATGATCAGATGCTATTAAA
TGCCACAGCCCTGATACGTTTGGAAGACTGGGACTTTTTAGAGAGTGCATTAGTTAGTTGGGATAATTTACCCGCTGTTG
TCCTCAAGGAATTACAGCAAAATACGCCACGCAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGCTCCCGT
GCGCAGGTTGATGAAGCATTACGCGTCTATTATGCACTCGACCCCGATGCGTTAGCACAACTGGATGTACTGGCAAAACA
ACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGCAATCTCACATTTTTCAAGTTCGGCGCACTTAACAACCGCCACA
CACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGAT
GTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACTGGATTTAGTCCGCCAGCT
GGCGCTTAACGGTAAGACGCGCGCAATACGGGAACAAGCGATGAGAAAACTTGATGAGTTGTATTGA

Upstream 100 bases:

>100_bases
AGTGTTGTCTACGTTGGATGGTATTTCGCGAGAATAACGAATATACAAAAGGGAAAGATGCATTTCCCTTTTGTTTCTTT
TTTAATGGCATGGAGTGCAT

Downstream 100 bases:

>100_bases
TCCACAACGTAATATTTCTTAACCCTTTGATTAATTGGGGATAATTATTCCTGACAGTGAGTCCCCAATACCTTGATATA
TTCTGAATTTTTAATGAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 768

Protein sequence:

>768_residues
MFKARICGWIGLLPLFMLSLPVQAELRCVANTVDIEPFFSAATAEDKQQVEQAINSSVNLVPFGLSASDWKVHRGDLVVE
GNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI
FINDIIAPIVASSTNSEFMVRASDKNDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
PKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIIRTLPRLKGISANLRKQLINSNDEQTIESMARYMPDNEILELTDQQ
LGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRS
DDSSIRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAAYLYQKFENDDDLIRVLFLAL
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADS
AAYETSADMILSELISHGEVDDQMLLNATALIRLEDWDFLESALVSWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSR
AQVDEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD
VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY

Sequences:

>Translated_768_residues
MFKARICGWIGLLPLFMLSLPVQAELRCVANTVDIEPFFSAATAEDKQQVEQAINSSVNLVPFGLSASDWKVHRGDLVVE
GNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI
FINDIIAPIVASSTNSEFMVRASDKNDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
PKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIIRTLPRLKGISANLRKQLINSNDEQTIESMARYMPDNEILELTDQQ
LGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRS
DDSSIRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAAYLYQKFENDDDLIRVLFLAL
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADS
AAYETSADMILSELISHGEVDDQMLLNATALIRLEDWDFLESALVSWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSR
AQVDEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD
VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY
>Mature_768_residues
MFKARICGWIGLLPLFMLSLPVQAELRCVANTVDIEPFFSAATAEDKQQVEQAINSSVNLVPFGLSASDWKVHRGDLVVE
GNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI
FINDIIAPIVASSTNSEFMVRASDKNDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
PKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIIRTLPRLKGISANLRKQLINSNDEQTIESMARYMPDNEILELTDQQ
LGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRS
DDSSIRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAAYLYQKFENDDDLIRVLFLAL
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADS
AAYETSADMILSELISHGEVDDQMLLNATALIRLEDWDFLESALVSWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSR
AQVDEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD
VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ykiA [H]

Homologues:

Organism=Escherichia coli, GI87081900, Length=768, Percent_Identity=97.7864583333333, Blast_Score=1538, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 86691; Mature: 86691

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKARICGWIGLLPLFMLSLPVQAELRCVANTVDIEPFFSAATAEDKQQVEQAINSSVNL
CCCHHHHHHHHHHHHHHHCCCCHHHHHEECCEECCCHHHHHCCHHHHHHHHHHHCCCCEE
VPFGLSASDWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN
EEECCCCCCCEEECCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCEEEEECCEEEE
IVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPIVASSTNSEFMV
EECCCCEEEEECCCCCEEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHCCCCCCEEEE
RASDKNDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
EECCCCCHHHHHEEEEEECCCCEEEEEECCHHHHHHHHHHCCCEEHHHHHHHHHHHHCCC
PKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIIRTLPRLKGISANLRKQLINSNDEQT
CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRE
HHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEHHHC
NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCHHCCCCHHHHHHCCCCCEEHHHHH
QLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAAYLYQKFENDDDLIRVLFLAL
HHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHC
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM
CCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
KQKIWQRALSHRKNNPKADSAAYETSADMILSELISHGEVDDQMLLNATALIRLEDWDFL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCEEEEEEECCHHHH
ESALVSWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQ
HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHEECCCCCHHHHHHHHEEEEEECHHHHHH
LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD
HHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCCCCHH
VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY
HHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFKARICGWIGLLPLFMLSLPVQAELRCVANTVDIEPFFSAATAEDKQQVEQAINSSVNL
CCCHHHHHHHHHHHHHHHCCCCHHHHHEECCEECCCHHHHHCCHHHHHHHHHHHCCCCEE
VPFGLSASDWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN
EEECCCCCCCEEECCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCEEEEECCEEEE
IVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPIVASSTNSEFMV
EECCCCEEEEECCCCCEEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHCCCCCCEEEE
RASDKNDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
EECCCCCHHHHHEEEEEECCCCEEEEEECCHHHHHHHHHHCCCEEHHHHHHHHHHHHCCC
PKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIIRTLPRLKGISANLRKQLINSNDEQT
CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRE
HHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEHHHC
NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCHHCCCCHHHHHHCCCCCEEHHHHH
QLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAAYLYQKFENDDDLIRVLFLAL
HHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHC
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM
CCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
KQKIWQRALSHRKNNPKADSAAYETSADMILSELISHGEVDDQMLLNATALIRLEDWDFL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCEEEEEEECCHHHH
ESALVSWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQ
HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHEECCCCCHHHHHHHHEEEEEECHHHHHH
LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD
HHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCCCCHH
VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY
HHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1665988 [H]