Click here to switch to the map view.

The map label for this gene is ycjD

Identifier: 218694865

GI number: 218694865

Start: 1493134

End: 1493487

Strand: Reverse

Name: ycjD

Synonym: EC55989_1451

Alternate gene names: 218694865

Gene position: 1493487-1493134 (Counterclockwise)

Preceding gene: 218694866

Following gene: 218694864

Centisome position: 28.97

GC content: 51.41

Gene sequence:

>354_bases
GTGATGGATAAAATAAAATCAAATGCGCGTGATTTAAGACGCAATCTCACTTTGCAGGAACGAAAGCTCTGGCGATATCT
TCGCAGCCGACGTTTTGGTGATTTCAAATTTCGCCGTCAACATCCGGTGGGGAGCTACATTCTCGATTTTGCTTGCTGCT
CGGCGCGCGTAGTCGTTGAGCTGGATGGTGGGCAGCATGATTTGGCAGTTGCCTATGATACCAGGCGCACTAGCTGGCTT
GAGTCGCAGAGCTGGACCGTGCTGCGTTTCTGGCATAACGAGATTGATTGTAATGAGGAGGCGGTGCTGGAGATTATTCT
GCAGGAACTGAACCGCCGGTCACCCTCACCCTGA

Upstream 100 bases:

>100_bases
TTGACAGCGGATGCGTGGCGTAAAGATCGCTAATTTTCTGAATCCTCCTTCCAGATTATCCACCTCATTCTGACAAGAGA
TTAAATCTTGTCAGAATGAG

Downstream 100 bases:

>100_bases
AAGGGCGAGGGGGCCGACCGAGCCGAATAGCTGTTGTGGTGAAAACATGGAGACAGTGCTGGAGAATATTCGGCAAGGTC
TGAACCGTCCCAGCCATCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWL
ESQSWTVLRFWHNEIDCNEEAVLEIILQELNRRSPSP

Sequences:

>Translated_117_residues
MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWL
ESQSWTVLRFWHNEIDCNEEAVLEIILQELNRRSPSP
>Mature_117_residues
MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWL
ESQSWTVLRFWHNEIDCNEEAVLEIILQELNRRSPSP

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=117, Percent_Identity=94.017094017094, Blast_Score=229, Evalue=3e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14013; Mature: 14013

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVE
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEE
LDGGQHDLAVAYDTRRTSWLESQSWTVLRFWHNEIDCNEEAVLEIILQELNRRSPSP
ECCCCCEEEEEECCCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVE
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEE
LDGGQHDLAVAYDTRRTSWLESQSWTVLRFWHNEIDCNEEAVLEIILQELNRRSPSP
ECCCCCEEEEEECCCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]