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The map label for this gene is ymdF

Identifier: 218694541

GI number: 218694541

Start: 1176688

End: 1176861

Strand: Direct

Name: ymdF

Synonym: EC55989_1116

Alternate gene names: 218694541

Gene position: 1176688-1176861 (Clockwise)

Preceding gene: 218694540

Following gene: 218694549

Centisome position: 22.83

GC content: 51.15

Gene sequence:

>174_bases
ATGGCAAACCATCGAGGCGGTTCCGGCAATTTTGCAGAAGACCGCGAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACA
GCACAGCGGGGATAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGCAAGAGCAGTCACGGCA
AAAGCGACAACTAG

Upstream 100 bases:

>100_bases
AGTTCACTAAGCTTAGTCCCACGTAGCGAAAATATGGCAGCCGCCATACGCCGCGTTAATTCTATGCAATATGATGTCTA
TACCCAGACGGAGGTCAGTA

Downstream 100 bases:

>100_bases
CCGGGCTAATCAATGACGAATGCATTTTTTTCTTAGGCTCGTCAAAAAGTCATCACCGCCGGTAATCCCGGCGGTTTTCT
GTTTATGGCTCCTGATGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 57; Mature: 56

Protein sequence:

>57_residues
MANHRGGSGNFAEDRERASEAGKKGGQHSGDNFKNDPQRASEAGKKGGKSSHGKSDN

Sequences:

>Translated_57_residues
MANHRGGSGNFAEDRERASEAGKKGGQHSGDNFKNDPQRASEAGKKGGKSSHGKSDN
>Mature_56_residues
ANHRGGSGNFAEDRERASEAGKKGGQHSGDNFKNDPQRASEAGKKGGKSSHGKSDN

Specific function: Unknown

COG id: COG3729

COG function: function code R; General stress protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the con-10 family [H]

Homologues:

Organism=Escherichia coli, GI87081817, Length=57, Percent_Identity=98.2456140350877, Blast_Score=107, Evalue=2e-25,
Organism=Escherichia coli, GI87081862, Length=43, Percent_Identity=88.3720930232558, Blast_Score=77, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019626 [H]

Pfam domain/function: PF10685 KGG [H]

EC number: NA

Molecular weight: Translated: 5941; Mature: 5810

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANHRGGSGNFAEDRERASEAGKKGGQHSGDNFKNDPQRASEAGKKGGKSSHGKSDN
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ANHRGGSGNFAEDRERASEAGKKGGQHSGDNFKNDPQRASEAGKKGGKSSHGKSDN
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]