Click here to switch to the map view.

The map label for this gene is ydfE [H]

Identifier: 218694449

GI number: 218694449

Start: 1096001

End: 1098493

Strand: Reverse

Name: ydfE [H]

Synonym: EC55989_1023

Alternate gene names: 218694449

Gene position: 1098493-1096001 (Counterclockwise)

Preceding gene: 218694450

Following gene: 218694448

Centisome position: 21.31

GC content: 49.14

Gene sequence:

>2493_bases
ATGAGTAAAGTCTTTATTTGCGCCGCCATTCCGGACGAACAGGCAATAAAGGAAGAAGGTGCCGTCGCTGTAGCCACTGC
CATTGAAGCCGGTGATGAACGTCGCGCCCGCGCAAAATTTCACTGGCAATTCCTGGAACATTATCCGGCTGCTCAGGACT
GCGCTTATAAATTTCTTGTCTGCGAGGATAAACCCGGTATACCCCGCCCTGCCCTCGATTCCTGGGATGCTGAATATATG
CAGGAAAACCGCTGGGATGAGGAATCCGCTTCCTTTATTCCGGTCGAACCAGAATCCGATCCGATGAACGTCAATTTTGA
CAAGCTGTCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTA
ACGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTT
AACGCCATGTATCCGGAGCTTAAGCTGCATGCCATCGGGTGGGTTAAGCATAAATGTAAGCCTGGTGCCAAATGGCCCGA
AATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATACACGTCTGTTGTTG
ATCTCGCCCGCGCCAGAACCAATCAACAGCACAGTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCAT
CGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTACGCTCTCTGGCCTGGTGATGTGGATGCCGGAAA
CATTGACGGCAGCATCCATCGCTGGGCAAAAAATGAAGTTATCGACAACGACCGCGAAGACTGGAAGCGTATCTCGGCAT
CAATGCGCAAACAGCCTGATGCCCTTCGCTACGACCGCCAGACTATTTTTGGCCTTGTCCGTGAACGTCCGATCGACATT
CACAAAGACCCTGTGGCACTGAACAAATACATTACTGAATACCTGACTACAAAGGGCGTGTTTGAAGATGAAGGAAGAAA
TCAGAGCGCAACTGATACTCTCTCGTCGCCAGTACCAGAAACTGATGCAGTGGAAACGGCAATGCCGGACAACGAAAAAA
CCGAATGCGAAGTGGAAGACGAACCATCTGTAGAGCGTGAGGGACCGTTCTACTTCCTTTTCACCGATAAGGACGGCGAA
AAATACGGTCGCGCAAACAAATTTTCTGGTCTGGAAAAAGCACTGGCCCTGGGAGCTACGGAAATCACAAAAGAGGAATA
CTTCGCACGTAAAAACGGCACGTACTCAGGTTCACAACAAAATACTGGTGCATCTGACACGATCGCACAACCAGAGCCGG
TAAAAGTTACCGCTGACGAAGTAAACAAAATTATGCAGGCAGCCAATATCAGCCAGCCTGACGCCAATAAGTTGCTTGCT
GTATCACGTGGTGAATTTGTTGCAGGGATTAGCGACCCGAATGATCCGAAATGGGTGAAGGGGATTGAAACCCGCGATTC
AGTGAATCAGAACCAGCAAGAAACGGAACAGAACGGCCAGAAAGCGGAACAAAACAGCCAGAAAGCGGAACAAAACAGCC
CAAATGCGTTACAAAACGAGCCAGAAACGAAACAACCTGAGCCAGTAGCGCAACAGGAACCGGAAAAAGTCTGCACCGCC
TGCGGTCAAAGCGGTGGCGGCAACTGCCCTGATTGTGGCGCGGTGATGGGTGACGCAACATACCAGGAAACATTCGATGA
AGAGAATCAGGTTGAAGTTCAGGAAAATGATCCGAAGGAAATGGAAGGCGCTGAACATCCACACAAGGAGAATGCTGGTA
GCGCTCAGGATCACGCCAGCGATAGTGAAACTGGCGAGACGGCAGATCCCTTAATTACGGTGAACGGTCATCACGTTATC
ACATCCACCAGCAGGACGTGTGACCATCTAATGATCGACCTTGAAACCATGGGAAAAAATCCTGATGCCCCGATCATCTC
AATAGGTGCAATATTTTTCGATCCGCAAACCGGAGATATGGGACCGGAATTTAGTAAGACTATCGATCTGGAAACTGCTG
GCGGAGTCATTGATCGGGACACCATTAAATGGTGGCTTAAGCAATCACGCGAAGCGCAATCTGCCATTATGACCGATGAA
ATCCCGTTAGATGATGCACTGTTACAATTGCGGGAATTTATCGACGAAAACTCCGGTGAATTTTTTGTTCAGGTCTGGGG
TGACGGTGCAACTTTCGACAACGTGATTTTACGCCGTTCATATGAACGGCAGGGGATCCCCTGCCCGTGGCGTTACACCA
ATGATCGCGATGTAAGAACGATGGTTGCTCTGGGACTGGTGATGGATTTCGACGCAAGAACGACTATTCCATTCGAAGGT
GAACGCCATAACGCTCTGAACGATGCACGTTACCAGGCGAAATACGTTTCAGCCATCTGGCAAAAACTGCTCCCGAGTCA
GGCTGATTTTTAA

Upstream 100 bases:

>100_bases
GATAACCCGCCAGCCATATTAACGCCATACCAACGGATTAAAAATGCCAGCAATGGCAGGGATTCGTTCACCCTGAAATC
TGTAATGAGGTTAAAACAAA

Downstream 100 bases:

>100_bases
TGTTCAACCCATATCGCCGCCCACCAGCTATAGTGGCGGCGGTCATGCTGTAAAGGCACGTGACCACATGTACGAATTAA
CTCTATCTCCAGCAGAGATT

Product: putative exonuclease from phage origin

Products: NA

Alternate protein names: ORF6 [H]

Number of amino acids: Translated: 830; Mature: 829

Protein sequence:

>830_residues
MSKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFLVCEDKPGIPRPALDSWDAEYM
QENRWDEESASFIPVEPESDPMNVNFDKLSPEVQNAVMVKFDTCENITVDMVINAQELLQEDMATFDGHIVEALMKMPEV
NAMYPELKLHAIGWVKHKCKPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARTNQQHSENSTGKISPVIAAIH
REYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWAKNEVIDNDREDWKRISASMRKQPDALRYDRQTIFGLVRERPIDI
HKDPVALNKYITEYLTTKGVFEDEGRNQSATDTLSSPVPETDAVETAMPDNEKTECEVEDEPSVEREGPFYFLFTDKDGE
KYGRANKFSGLEKALALGATEITKEEYFARKNGTYSGSQQNTGASDTIAQPEPVKVTADEVNKIMQAANISQPDANKLLA
VSRGEFVAGISDPNDPKWVKGIETRDSVNQNQQETEQNGQKAEQNSQKAEQNSPNALQNEPETKQPEPVAQQEPEKVCTA
CGQSGGGNCPDCGAVMGDATYQETFDEENQVEVQENDPKEMEGAEHPHKENAGSAQDHASDSETGETADPLITVNGHHVI
TSTSRTCDHLMIDLETMGKNPDAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDE
IPLDDALLQLREFIDENSGEFFVQVWGDGATFDNVILRRSYERQGIPCPWRYTNDRDVRTMVALGLVMDFDARTTIPFEG
ERHNALNDARYQAKYVSAIWQKLLPSQADF

Sequences:

>Translated_830_residues
MSKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFLVCEDKPGIPRPALDSWDAEYM
QENRWDEESASFIPVEPESDPMNVNFDKLSPEVQNAVMVKFDTCENITVDMVINAQELLQEDMATFDGHIVEALMKMPEV
NAMYPELKLHAIGWVKHKCKPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARTNQQHSENSTGKISPVIAAIH
REYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWAKNEVIDNDREDWKRISASMRKQPDALRYDRQTIFGLVRERPIDI
HKDPVALNKYITEYLTTKGVFEDEGRNQSATDTLSSPVPETDAVETAMPDNEKTECEVEDEPSVEREGPFYFLFTDKDGE
KYGRANKFSGLEKALALGATEITKEEYFARKNGTYSGSQQNTGASDTIAQPEPVKVTADEVNKIMQAANISQPDANKLLA
VSRGEFVAGISDPNDPKWVKGIETRDSVNQNQQETEQNGQKAEQNSQKAEQNSPNALQNEPETKQPEPVAQQEPEKVCTA
CGQSGGGNCPDCGAVMGDATYQETFDEENQVEVQENDPKEMEGAEHPHKENAGSAQDHASDSETGETADPLITVNGHHVI
TSTSRTCDHLMIDLETMGKNPDAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDE
IPLDDALLQLREFIDENSGEFFVQVWGDGATFDNVILRRSYERQGIPCPWRYTNDRDVRTMVALGLVMDFDARTTIPFEG
ERHNALNDARYQAKYVSAIWQKLLPSQADF
>Mature_829_residues
SKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFLVCEDKPGIPRPALDSWDAEYMQ
ENRWDEESASFIPVEPESDPMNVNFDKLSPEVQNAVMVKFDTCENITVDMVINAQELLQEDMATFDGHIVEALMKMPEVN
AMYPELKLHAIGWVKHKCKPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARTNQQHSENSTGKISPVIAAIHR
EYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWAKNEVIDNDREDWKRISASMRKQPDALRYDRQTIFGLVRERPIDIH
KDPVALNKYITEYLTTKGVFEDEGRNQSATDTLSSPVPETDAVETAMPDNEKTECEVEDEPSVEREGPFYFLFTDKDGEK
YGRANKFSGLEKALALGATEITKEEYFARKNGTYSGSQQNTGASDTIAQPEPVKVTADEVNKIMQAANISQPDANKLLAV
SRGEFVAGISDPNDPKWVKGIETRDSVNQNQQETEQNGQKAEQNSQKAEQNSPNALQNEPETKQPEPVAQQEPEKVCTAC
GQSGGGNCPDCGAVMGDATYQETFDEENQVEVQENDPKEMEGAEHPHKENAGSAQDHASDSETGETADPLITVNGHHVIT
STSRTCDHLMIDLETMGKNPDAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDEI
PLDDALLQLREFIDENSGEFFVQVWGDGATFDNVILRRSYERQGIPCPWRYTNDRDVRTMVALGLVMDFDARTTIPFEGE
RHNALNDARYQAKYVSAIWQKLLPSQADF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787612, Length=378, Percent_Identity=38.8888888888889, Blast_Score=212, Evalue=6e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 93152; Mature: 93021

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFLV
CCCEEEEEECCCHHHHHHCCCEEEEEEHHCCCHHHHHHHHHHHHHHHCCCHHHCEEEEEE
CEDKPGIPRPALDSWDAEYMQENRWDEESASFIPVEPESDPMNVNFDKLSPEVQNAVMVK
ECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHCCHHHCCEEEEE
FDTCENITVDMVINAQELLQEDMATFDGHIVEALMKMPEVNAMYPELKLHAIGWVKHKCK
EECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHCCC
PGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARTNQQHSENSTGKISPVIAAIH
CCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHH
REYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWAKNEVIDNDREDWKRISASMRKQPD
HHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCH
ALRYDRQTIFGLVRERPIDIHKDPVALNKYITEYLTTKGVFEDEGRNQSATDTLSSPVPE
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
TDAVETAMPDNEKTECEVEDEPSVEREGPFYFLFTDKDGEKYGRANKFSGLEKALALGAT
CCCHHHCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCCHHHCCCHHHHHHHHHHHHCHH
EITKEEYFARKNGTYSGSQQNTGASDTIAQPEPVKVTADEVNKIMQAANISQPDANKLLA
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCEEE
VSRGEFVAGISDPNDPKWVKGIETRDSVNQNQQETEQNGQKAEQNSQKAEQNSPNALQNE
EECCCEEEECCCCCCCHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PETKQPEPVAQQEPEKVCTACGQSGGGNCPDCGAVMGDATYQETFDEENQVEVQENDPKE
CCCCCCCCCHHCCHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCEEECCCCCHH
MEGAEHPHKENAGSAQDHASDSETGETADPLITVNGHHVITSTSRTCDHLMIDLETMGKN
CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCEEEECCCCCHHHHEEEHHHCCCC
PDAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDE
CCCCEEEEEEEEECCCCCCCCCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
IPLDDALLQLREFIDENSGEFFVQVWGDGATFDNVILRRSYERQGIPCPWRYTNDRDVRT
CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
MVALGLVMDFDARTTIPFEGERHNALNDARYQAKYVSAIWQKLLPSQADF
HHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFLV
CCEEEEEECCCHHHHHHCCCEEEEEEHHCCCHHHHHHHHHHHHHHHCCCHHHCEEEEEE
CEDKPGIPRPALDSWDAEYMQENRWDEESASFIPVEPESDPMNVNFDKLSPEVQNAVMVK
ECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHCCHHHCCEEEEE
FDTCENITVDMVINAQELLQEDMATFDGHIVEALMKMPEVNAMYPELKLHAIGWVKHKCK
EECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHCCC
PGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARTNQQHSENSTGKISPVIAAIH
CCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHH
REYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWAKNEVIDNDREDWKRISASMRKQPD
HHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCH
ALRYDRQTIFGLVRERPIDIHKDPVALNKYITEYLTTKGVFEDEGRNQSATDTLSSPVPE
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
TDAVETAMPDNEKTECEVEDEPSVEREGPFYFLFTDKDGEKYGRANKFSGLEKALALGAT
CCCHHHCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCCHHHCCCHHHHHHHHHHHHCHH
EITKEEYFARKNGTYSGSQQNTGASDTIAQPEPVKVTADEVNKIMQAANISQPDANKLLA
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCEEE
VSRGEFVAGISDPNDPKWVKGIETRDSVNQNQQETEQNGQKAEQNSQKAEQNSPNALQNE
EECCCEEEECCCCCCCHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PETKQPEPVAQQEPEKVCTACGQSGGGNCPDCGAVMGDATYQETFDEENQVEVQENDPKE
CCCCCCCCCHHCCHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCEEECCCCCHH
MEGAEHPHKENAGSAQDHASDSETGETADPLITVNGHHVITSTSRTCDHLMIDLETMGKN
CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCEEEECCCCCHHHHEEEHHHCCCC
PDAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDE
CCCCEEEEEEEEECCCCCCCCCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
IPLDDALLQLREFIDENSGEFFVQVWGDGATFDNVILRRSYERQGIPCPWRYTNDRDVRT
CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
MVALGLVMDFDARTTIPFEGERHNALNDARYQAKYVSAIWQKLLPSQADF
HHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2477663; 9097039; 9278503 [H]