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The map label for this gene is ycbF

Identifier: 218694419

GI number: 218694419

Start: 1066816

End: 1067526

Strand: Direct

Name: ycbF

Synonym: EC55989_0993

Alternate gene names: 218694419

Gene position: 1066816-1067526 (Clockwise)

Preceding gene: 218694418

Following gene: 218694420

Centisome position: 20.7

GC content: 51.9

Gene sequence:

>711_bases
ATGACTAATACGTGGAACAGATTGGCGCTCTTGATTTTCGCCGTTTTATCGCTGCTGGTGGCGGGTGAATTGCGGGCAGG
AGTGGTGGTCGGCGGAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGG
AATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGGAAGCGTCGACAGTGCCAGCACCATTA
CTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACTACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACATCTT
GCCTGTGGATCGCGAAACGCTATTTGAGTTAAGCATTGCCAGCGTGCCATCCGGCAAAGTTGAAAATCAGAGCGTAAAAG
TGGCGATGCGCTCGGTATTTAAACTGTTCTGGCGACCCGAAGGTTTGCCGGGCGACCCTCTGGAAGCTTATCAACAATTA
CGCTGGACACGGAATTCGCAGGGTGTACAACTCACTAACCCAACGCCTTACTACATTAACCTGATTCAGTTGAGCGTAAA
TGGTAAAGCGTTAAGTAATGCGGGAGTTGTGCCGCCTAAAAGCCAGCGTCAGACAAGCTGGTGTCAGGCAATCGCACCGT
GTCATGTCGCCTGGCGGGCGATAAATGATTACGGCGGGTTGAGTGCAAAGAAGGAGCAAAATCTGCCCTGA

Upstream 100 bases:

>100_bases
AGCGGTAAGGTGCCATTAACTTTTTATGCGCAATTGCGACCTGTCAATAGCGATGTGCAGTCGGGTAAAGTGAATGCCAG
CGCGACATTTGTACTTCATT

Downstream 100 bases:

>100_bases
AACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCC
GGTTTGCACACCGGGAATCC

Product: putativi pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPL
LAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQL
RWTRNSQGVQLTNPTPYYINLIQLSVNGKALSNAGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP

Sequences:

>Translated_236_residues
MTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPL
LAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQL
RWTRNSQGVQLTNPTPYYINLIQLSVNGKALSNAGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP
>Mature_235_residues
TNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLL
AAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLR
WTRNSQGVQLTNPTPYYINLIQLSVNGKALSNAGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI87081806, Length=236, Percent_Identity=98.728813559322, Blast_Score=471, Evalue=1e-134,
Organism=Escherichia coli, GI1790771, Length=223, Percent_Identity=33.1838565022422, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1787171, Length=222, Percent_Identity=34.2342342342342, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786333, Length=239, Percent_Identity=30.9623430962343, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1786743, Length=236, Percent_Identity=28.3898305084746, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI1789532, Length=228, Percent_Identity=28.5087719298246, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082203, Length=216, Percent_Identity=25.9259259259259, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1786936, Length=184, Percent_Identity=32.6086956521739, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788677, Length=176, Percent_Identity=27.8409090909091, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1788428, Length=231, Percent_Identity=23.3766233766234, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25867; Mature: 25736

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRFIFPADRESISILLTNTSQESWLINS
CCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEEEECCCCEEEEEEECCCCCCEEEEC
KINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIA
CCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCEEEEEECCCCCCCCCHHHHHEEEEC
SVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYIN
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCEEEE
LIQLSVNGKALSNAGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP
EEEEEECCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRFIFPADRESISILLTNTSQESWLINS
CCCHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEEEECCCCEEEEEEECCCCCCEEEEC
KINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIA
CCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCEEEEEECCCCCCCCCHHHHHEEEEC
SVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYIN
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCEEEE
LIQLSVNGKALSNAGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP
EEEEEECCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 2992959; 7984428 [H]