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The map label for this gene is rzpD [H]

Identifier: 218694216

GI number: 218694216

Start: 838985

End: 839434

Strand: Direct

Name: rzpD [H]

Synonym: EC55989_0785

Alternate gene names: 218694216

Gene position: 838985-839434 (Clockwise)

Preceding gene: 218694215

Following gene: 218694217

Centisome position: 16.28

GC content: 50.44

Gene sequence:

>450_bases
GTGGGGGCAGCAATGAGCAGAGTAACTGCGATTATCTTCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGT
TAATCATTACCGTGATAACGCCATGACCTACAAAGAACAGCGCGACAAAGCCACATCCATCATCGCTGACATGCAGAAGC
GTCAACGTGACGTAGCAGAACTCGATGCCAGATATACAAAGGAACTTGCTGATGCTAACGCGACTATCGAAAGTCTCCGT
GATGATGTTTCTGCTGGGCGTAAGCGGCTGCAAGTCGCCGCCTCCTGTGCAAAGTCAAAGACCGGAGCCAGCAGCATGGG
CGATGGAGAAAGCCCAAGACTTACAGCAGATGCTGAACTCAATTATTACCGTCTCCGAAGTGGAATCGACAGGATAACCG
CGCAGGTTAACTACCTGCAGGAGTACATCAGGACGCAATGTCTGAAATAA

Upstream 100 bases:

>100_bases
TCAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGGCTGATGACTCGCCGTGAG
ATTGAGCGTGAAGTCTGTTT

Downstream 100 bases:

>100_bases
TTTTTTTGCAAATCACAAAGTCCATTTAATGAGCCTCGCGATGCGGGGCTTTTTTGCAATAAATGCGTACCGCAACGCAT
GTTTTTTTTTACACCGAACC

Product: bacteriophage lysis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MGAAMSRVTAIIFALVICIIVCLSWAVNHYRDNAMTYKEQRDKATSIIADMQKRQRDVAELDARYTKELADANATIESLR
DDVSAGRKRLQVAASCAKSKTGASSMGDGESPRLTADAELNYYRLRSGIDRITAQVNYLQEYIRTQCLK

Sequences:

>Translated_149_residues
MGAAMSRVTAIIFALVICIIVCLSWAVNHYRDNAMTYKEQRDKATSIIADMQKRQRDVAELDARYTKELADANATIESLR
DDVSAGRKRLQVAASCAKSKTGASSMGDGESPRLTADAELNYYRLRSGIDRITAQVNYLQEYIRTQCLK
>Mature_148_residues
GAAMSRVTAIIFALVICIIVCLSWAVNHYRDNAMTYKEQRDKATSIIADMQKRQRDVAELDARYTKELADANATIESLRD
DVSAGRKRLQVAASCAKSKTGASSMGDGESPRLTADAELNYYRLRSGIDRITAQVNYLQEYIRTQCLK

Specific function: Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786769, Length=152, Percent_Identity=56.578947368421, Blast_Score=139, Evalue=9e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004929 [H]

Pfam domain/function: PF03245 Phage_lysis [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 16631; Mature: 16500

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAAMSRVTAIIFALVICIIVCLSWAVNHYRDNAMTYKEQRDKATSIIADMQKRQRDVAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDARYTKELADANATIESLRDDVSAGRKRLQVAASCAKSKTGASSMGDGESPRLTADAEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCH
NYYRLRSGIDRITAQVNYLQEYIRTQCLK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GAAMSRVTAIIFALVICIIVCLSWAVNHYRDNAMTYKEQRDKATSIIADMQKRQRDVAE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDARYTKELADANATIESLRDDVSAGRKRLQVAASCAKSKTGASSMGDGESPRLTADAEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCH
NYYRLRSGIDRITAQVNYLQEYIRTQCLK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]