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The map label for this gene is ybaQ

Identifier: 218693945

GI number: 218693945

Start: 535529

End: 535870

Strand: Direct

Name: ybaQ

Synonym: EC55989_0496

Alternate gene names: 218693945

Gene position: 535529-535870 (Clockwise)

Preceding gene: 218693942

Following gene: 218693947

Centisome position: 10.39

GC content: 45.03

Gene sequence:

>342_bases
ATGAAACAGGCAACAAGAAAACCGACGACACCCGGAGATATTCTTCTCTATGAATATCAGGAACCGCTCGATTTGAAAAT
CAATGAGTTAGCAGAGTTGCTGCATGTTCATCGTAATAGCGTCAGTGCACTGATCAATAACAATCGTAAACTCACCACTG
AGATGGCATTCCGTCTGGCGAAAGTTTTTGATACCACAGTCGATTTTAGGCTAAACCTCCAGGCGGCAGTTGATCTTTGG
GAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGA
GCGTGCAAAAAAGGTCGCGTAA

Upstream 100 bases:

>100_bases
TGAGGGATGGCGCAAATGGAGTTGGGGACTTGTTTAATGTGTTTGTATGATTCAGTATGTTCTTGCATCGCTATTCACAG
GGAAGCAACAGTTAAAAACC

Downstream 100 bases:

>100_bases
GGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCG
CCGCCCTAAAGCAGCGCATC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MKQATRKPTTPGDILLYEYQEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFRLNLQAAVDLW
EVENNMRTQEELGRIETVAEYLARREERAKKVA

Sequences:

>Translated_113_residues
MKQATRKPTTPGDILLYEYQEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFRLNLQAAVDLW
EVENNMRTQEELGRIETVAEYLARREERAKKVA
>Mature_113_residues
MKQATRKPTTPGDILLYEYQEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFRLNLQAAVDLW
EVENNMRTQEELGRIETVAEYLARREERAKKVA

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081745, Length=113, Percent_Identity=98.2300884955752, Blast_Score=223, Evalue=2e-60,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 13156; Mature: 13156

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQATRKPTTPGDILLYEYQEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLA
CCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
KVFDTTVDFRLNLQAAVDLWEVENNMRTQEELGRIETVAEYLARREERAKKVA
HHHHHHHCEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKQATRKPTTPGDILLYEYQEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLA
CCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
KVFDTTVDFRLNLQAAVDLWEVENNMRTQEELGRIETVAEYLARREERAKKVA
HHHHHHHCEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]