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The map label for this gene is ykgA

Identifier: 218693760

GI number: 218693760

Start: 333123

End: 334013

Strand: Reverse

Name: ykgA

Synonym: EC55989_0303

Alternate gene names: 218693760

Gene position: 334013-333123 (Counterclockwise)

Preceding gene: 218693761

Following gene: 218693758

Centisome position: 6.48

GC content: 43.66

Gene sequence:

>891_bases
GTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTGAGTG
CAATCTTGAGCACCCTATTTCAATCGAAGATATCGCACAGAAATCTGGCTACAGCAGACGCAACATCCAGCTTCTGTTCC
GAAATTTCATGCATGTGCCTTTGGGAGAATACATTCGCAAACGAAGGCTTTGTCGTGCCGCCATTCTTGTCCGGCTCACC
GCGAAATCTATGCTTGATATTGCACTCTCTTTGCATTTTGATTCACAGCAGTCATTCAGCCGCGAATTTAAAAAGTTATT
CGGCTGCTCTCCCCGTGAATACCGCCACCGTGATTATTGGGATCTCGCAAATATCTTCCCTTCTTTTTTAATACGTCAAC
AGCAAAAGACGGAGTGTAGATTAATCAACTTTCCTGAGACACCTATTTTTGGCAACTCATTTAAATATGACATTGAAGTG
TCGAATAAATCACCGGATGAAGAAGTCAAACTACGACGTCATCATTTAGCCAGATGTATGAAGAATTTTAAGACGGATAT
CTATTTCGTTTCCACGTTTGAACCGTCAACAAAATCGGTCGATTTGCTCACGGTTGAAACTTTTGCTGGTACGGTATGCA
AACCAACCGATTCAGAGATGCCGAAAGAGTGGACAATTAACCGAGGACTGTATGCCTCTTTCCGCTATGAAGGTGAGTGG
GAGCACTACCCTGAATGGGCGCGAAACCTCTATCTGATGGAATTACCCGCCAGGGGGTTAGCCAGAGTGAACGGCAGTGA
TATTGAGCGGTTTTATTACAATGAAGATTTCGTAGAAAAGGATAGCAATGATGTTGTTTGCGAAATTTTTATCCCCGTTC
GTCCGGTTTAG

Upstream 100 bases:

>100_bases
ACCTCTCTATTTTCGGGGACAACGAAGCAGACGCTACCAGTGCTTTTGCCTTCGCCCTTGCTATTTTTGATACACTTAGG
GCCCAGGGTATAACGAAAAT

Downstream 100 bases:

>100_bases
TTTTCGCTATATCTAAATGAATTTATAACGAGACTACTGTCAGGAAATTCAATAAATAATGGCGTTGAAGATGTCAACGC
CATTATTGTTTATTAGAATG

Product: Putatve transcriptional regulator ykgA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MRYDKELTENEMIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLT
AKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLIRQQQKTECRLINFPETPIFGNSFKYDIEV
SNKSPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCKPTDSEMPKEWTINRGLYASFRYEGEW
EHYPEWARNLYLMELPARGLARVNGSDIERFYYNEDFVEKDSNDVVCEIFIPVRPV

Sequences:

>Translated_296_residues
MRYDKELTENEMIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLT
AKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLIRQQQKTECRLINFPETPIFGNSFKYDIEV
SNKSPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCKPTDSEMPKEWTINRGLYASFRYEGEW
EHYPEWARNLYLMELPARGLARVNGSDIERFYYNEDFVEKDSNDVVCEIFIPVRPV
>Mature_296_residues
MRYDKELTENEMIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLT
AKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLIRQQQKTECRLINFPETPIFGNSFKYDIEV
SNKSPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCKPTDSEMPKEWTINRGLYASFRYEGEW
EHYPEWARNLYLMELPARGLARVNGSDIERFYYNEDFVEKDSNDVVCEIFIPVRPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=291, Percent_Identity=31.6151202749141, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1790497, Length=106, Percent_Identity=46.2264150943396, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=36.734693877551, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35315; Mature: 35315

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYDKELTENEMIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVP
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCC
LGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCHHHCCCCHH
DLANIFPSFLIRQQQKTECRLINFPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCM
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
KNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCKPTDSEMPKEWTINRGLYASFRYEGEW
HHCCCCEEEEEECCCCCCCEEEEEEEHHCCCCCCCCCCCCCCCEECCCCEEEEEEECCCC
EHYPEWARNLYLMELPARGLARVNGSDIERFYYNEDFVEKDSNDVVCEIFIPVRPV
CCCHHHHHCEEEEECCCCCHHHCCCCHHHHHCCCCHHHCCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MRYDKELTENEMIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVP
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCC
LGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCHHHCCCCHH
DLANIFPSFLIRQQQKTECRLINFPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCM
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
KNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCKPTDSEMPKEWTINRGLYASFRYEGEW
HHCCCCEEEEEECCCCCCCEEEEEEEHHCCCCCCCCCCCCCCCEECCCCEEEEEEECCCC
EHYPEWARNLYLMELPARGLARVNGSDIERFYYNEDFVEKDSNDVVCEIFIPVRPV
CCCHHHHHCEEEEECCCCCHHHCCCCHHHHHCCCCHHHCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]