Click here to switch to the map view.

The map label for this gene is ykgK

Identifier: 218693756

GI number: 218693756

Start: 325138

End: 325728

Strand: Reverse

Name: ykgK

Synonym: EC55989_0298

Alternate gene names: 218693756

Gene position: 325728-325138 (Counterclockwise)

Preceding gene: 218693758

Following gene: 218693755

Centisome position: 6.32

GC content: 39.26

Gene sequence:

>591_bases
GTGACATGGCAAAGTGATTACAGCAGGGACTATGAGGTTAAAAACCATATGGAATGTCAAAACCGTTCTGATAAATACAT
CTGGTCTCCCCATGACGCCTACTTCTATAAAGGACTATCTGAACTGATTGTGGATATCGACAGATTAATTTATCTATCGT
TGGAGAAAATTAGAAAAGATTTCGTGTTTATCAATCTCAATACGGATTCTTTATCTGAATTTATAAACCGTGATAATGAA
TGGTTATCCGCGGTAAAGGGGAAACAGGTCGTATTGATTGCGGCCAGAAAGTCAGAAGCCTTAGCAAATTATTGGTATTA
CAACAGCAATATTAGGGGCGTGGTATACGCAGGACTGAGTCGTGATATTAGAAAAGAACTGGCCTATGTGATTAATGGCA
GGTTCCTGAGAAAAGATATTAAGAAAGATAAAATCACGGACCGGGAAATGGAAATTATCCGCATGACGGCCCAGGGAATG
CAACCTAAATCGATTGCCAGAATTGAAAATTGTAGTGTGAAGACAGTGTATACCCATCGGCGTAATGCTGAGGCCAAGCT
GTACTCAAAAATATATAAGTTGGTTCAGTAA

Upstream 100 bases:

>100_bases
ATCTCGTTTAACCTTTATTGATATGTACTACGTATCTTATTTACTTCCGGTTTACTAAGGAAACTGAATGCACCTGTAAA
AATTACAGGTTTGGAAAGTA

Downstream 100 bases:

>100_bases
ACTCCAGGCAAGTTAGTTTTAAAAAATGACTCACTGGGACATCACGTCCTCAATTCAACTCGGGAAGAAATGCAATGAAA
AAAAAGGTTCTGGCAATAGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MTWQSDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLNTDSLSEFINRDNE
WLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELAYVINGRFLRKDIKKDKITDREMEIIRMTAQGM
QPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLVQ

Sequences:

>Translated_196_residues
MTWQSDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLNTDSLSEFINRDNE
WLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELAYVINGRFLRKDIKKDKITDREMEIIRMTAQGM
QPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLVQ
>Mature_195_residues
TWQSDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLNTDSLSEFINRDNEW
LSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELAYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQ
PKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI2367106, Length=196, Percent_Identity=98.9795918367347, Blast_Score=399, Evalue=1e-113,
Organism=Escherichia coli, GI87082166, Length=172, Percent_Identity=25.5813953488372, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 23273; Mature: 23142

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWQSDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD
CCCCCCCCCCCCHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FVFINLNTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS
EEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCHHHHHHEEECCCCCEEEEECCC
RDIRKELAYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR
HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECC
RNAEAKLYSKIYKLVQ
CCCHHHHHHHHHHHHC
>Mature Secondary Structure 
TWQSDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD
CCCCCCCCCCCHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FVFINLNTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS
EEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCHHHHHHEEECCCCCEEEEECCC
RDIRKELAYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR
HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECC
RNAEAKLYSKIYKLVQ
CCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA