Click here to switch to the map view.

The map label for this gene is 218693686

Identifier: 218693686

GI number: 218693686

Start: 252235

End: 252996

Strand: Reverse

Name: 218693686

Synonym: EC55989_0224

Alternate gene names: NA

Gene position: 252996-252235 (Counterclockwise)

Preceding gene: 218693687

Following gene: 218693685

Centisome position: 4.91

GC content: 53.02

Gene sequence:

>762_bases
ATGGATGAGGGGTCACTGTCTCTGCCACCATTTACCGGATACGACGAAAAAAGCCAGCGCAACTACCATCTCGCGCTTCG
TGGCAACAGCCTGAATCCGATGATCGACGCGGCCACGCCGCTACTCGGTATGGTAATGCGCCTTTCAACCATGAACAGCC
AGACGATGCCGGAGCATCTTTTTGCTCAGGTGGTGACGGATGTTCAGGCCGTGGAGCAACTGCTTCAGGAGCAGGGCTAC
GAACCGGGCGTGATTATCTCGTTTCGCTACATCCTCTGCACGTTTATTGATGAAGCGGCGCTCGGTAACGGCTGGTCAAA
CAAGAACGAGTGGATCAAGCAGTCATTGCTGGTCCATTTCCACAACGAAGCCTGGGGTGGAGAGAAAGTTTTCATCCTGC
TGGAGCGCCTGATCCGTGAACCCAAACGTTACCAGGATCTGCTGGAATTTCTCTGGATCTGTTTTTCTCTGGGATTTCGC
GGGCGCTACAAAGTGGCAGCACAGGATCAGGGGGAATTTGAGCAGATCTACCGCCGTCTGTACCACGTTCAGCATAAACT
GCGCGGCGATGCCCCTTTCCCGCTGTTACACCAGGACAAAAAAACCCAGGGCGGGCGTTATCAGCTCATCAGTCGCCTGA
CTGTTAAACATATTTTTTGTGGTGGCGTTGTCGTGCTGGCGTTGTTTTACCTGTTCTATCTGTTGCGGCTGGACAGCCAG
ACGCAGGACATCCTGCACCAGCTAAACAAATTACTTCGATAA

Upstream 100 bases:

>100_bases
GCCTGGACAGAAATGGCTGCCGCCGGGGCCGTTGCACTGCATGTATCCGGCAGTTTCCCGGATCTGAACATGCAACTGTG
GGCGATAAGAGGGTAAGACG

Downstream 100 bases:

>100_bases
GGACGTTTATGATCCAGATTGATCTTCCCACGCTGGTAAAACGGCTGAACCTGTTCTCCCGCCAGGCGCTGGAGATGGCC
GCCTCTGAATGTATGAGTCA

Product: Putative membrane protein Aec26

Products: NA

Alternate protein names: OmpA Family Protein; Outer Membrane Protein; OmpA/MotB Domain-Containing Protein; Type IV / VI Secretion System Protein; Type VI Secretion System OmpA/MotB Family Protein; DotU Family Type IV/VI Secretion System Protein; Type IV/VI Secretion System Protein; Type VI Secretion System Core Protein; SciP Protein; Flagellar Motor Rotation Protein MotB; Replication/Virulence Associated Protein; Ompa/Motb Domain Protein; DotU Family Type IV / VI Secretion System Protein; OmpA/MotB Domain Protein; Type VI Secretion System Protein ImpK; Aspartyl/Glutamyl-TRNA(Asn/Gln) Amidotransferase Subunit B; OmpA-Family Protein; Type VI Secretion; Outer Membrane Protein Ompa/Motb Family; OmpA-Like Porin; T6ss U; OmpA/MotB; Flagellar Motor Protein; Type IV / VI Secretion System Family Protein DotU; Type VI Secretion System VasF

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MDEGSLSLPPFTGYDEKSQRNYHLALRGNSLNPMIDAATPLLGMVMRLSTMNSQTMPEHLFAQVVTDVQAVEQLLQEQGY
EPGVIISFRYILCTFIDEAALGNGWSNKNEWIKQSLLVHFHNEAWGGEKVFILLERLIREPKRYQDLLEFLWICFSLGFR
GRYKVAAQDQGEFEQIYRRLYHVQHKLRGDAPFPLLHQDKKTQGGRYQLISRLTVKHIFCGGVVVLALFYLFYLLRLDSQ
TQDILHQLNKLLR

Sequences:

>Translated_253_residues
MDEGSLSLPPFTGYDEKSQRNYHLALRGNSLNPMIDAATPLLGMVMRLSTMNSQTMPEHLFAQVVTDVQAVEQLLQEQGY
EPGVIISFRYILCTFIDEAALGNGWSNKNEWIKQSLLVHFHNEAWGGEKVFILLERLIREPKRYQDLLEFLWICFSLGFR
GRYKVAAQDQGEFEQIYRRLYHVQHKLRGDAPFPLLHQDKKTQGGRYQLISRLTVKHIFCGGVVVLALFYLFYLLRLDSQ
TQDILHQLNKLLR
>Mature_253_residues
MDEGSLSLPPFTGYDEKSQRNYHLALRGNSLNPMIDAATPLLGMVMRLSTMNSQTMPEHLFAQVVTDVQAVEQLLQEQGY
EPGVIISFRYILCTFIDEAALGNGWSNKNEWIKQSLLVHFHNEAWGGEKVFILLERLIREPKRYQDLLEFLWICFSLGFR
GRYKVAAQDQGEFEQIYRRLYHVQHKLRGDAPFPLLHQDKKTQGGRYQLISRLTVKHIFCGGVVVLALFYLFYLLRLDSQ
TQDILHQLNKLLR

Specific function: Unknown

COG id: COG3455

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29390; Mature: 29390

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA