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The map label for this gene is yjiW [H]

Identifier: 218692730

GI number: 218692730

Start: 5142593

End: 5142991

Strand: Reverse

Name: yjiW [H]

Synonym: ECED1_5211

Alternate gene names: 218692730

Gene position: 5142991-5142593 (Counterclockwise)

Preceding gene: 218692731

Following gene: 218692726

Centisome position: 98.72

GC content: 54.39

Gene sequence:

>399_bases
GTGCGCCAACACACCCGCACCGCTCATCACAATCACTATTCCAGGAGAATAGCAGTTATGACTGACACGCATTCTATTGC
ACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCATGTCACCGTCGGTTATGCGAGCCGCTACCCGGATTACA
GCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGCAGCCGCCGGTTTTGCCACCGGCACGGCGATAGATGTCAAA
GTAATGGAAGGCTGTATTGTCCTCACCGCCCAACCCACCGCCGCCGAAGAGAGCGAGCTGATGCAGTCACTACGCCAGGT
GTGCAAACTGTCGGCGCGTAAACAAAAGCAGGTGCAGGAATTTATTGGGGTGATTACAGGTAAAAAGAAAGTCGCCTGA

Upstream 100 bases:

>100_bases
TTATATTTTACGCTAATTTTCATCTTATTTTCATTAATTTTTAGCTGGACTTTCCCTGTATTTACTGATGATATATCCAG
GTATTTAGCGCGGTGCGGAT

Downstream 100 bases:

>100_bases
TACATTGACCCGGTAGCGCCAGTGCTACCGGGTATTATTCGCCGTGTTAGACCAACGCGCTCTCCATCTGTTTTTCAAAT
GCCTGACGAATTAATCCCAT

Product: endoribonuclease SymE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MRQHTRTAHHNHYSRRIAVMTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAITLKGQWLAAAGFATGTAIDVK
VMEGCIVLTAQPTAAEESELMQSLRQVCKLSARKQKQVQEFIGVITGKKKVA

Sequences:

>Translated_132_residues
MRQHTRTAHHNHYSRRIAVMTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAITLKGQWLAAAGFATGTAIDVK
VMEGCIVLTAQPTAAEESELMQSLRQVCKLSARKQKQVQEFIGVITGKKKVA
>Mature_132_residues
MRQHTRTAHHNHYSRRIAVMTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAITLKGQWLAAAGFATGTAIDVK
VMEGCIVLTAQPTAAEESELMQSLRQVCKLSARKQKQVQEFIGVITGKKKVA

Specific function: Involved in the degradation and recycling of damaged RNA. It is itself a target for degradation by the ATP-dependent protease La [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the symE family [H]

Homologues:

Organism=Escherichia coli, GI145693217, Length=113, Percent_Identity=94.6902654867257, Blast_Score=225, Evalue=9e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020883
- InterPro:   IPR014944 [H]

Pfam domain/function: PF08845 DUF1813 [H]

EC number: NA

Molecular weight: Translated: 14605; Mature: 14605

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQHTRTAHHNHYSRRIAVMTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAIT
CCCCCCCCCCCCCCCEEEEEECCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEE
LKGQWLAAAGFATGTAIDVKVMEGCIVLTAQPTAAEESELMQSLRQVCKLSARKQKQVQE
ECCCEEEECCCCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FIGVITGKKKVA
HHHHHCCCCCCC
>Mature Secondary Structure
MRQHTRTAHHNHYSRRIAVMTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAIT
CCCCCCCCCCCCCCCEEEEEECCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEE
LKGQWLAAAGFATGTAIDVKVMEGCIVLTAQPTAAEESELMQSLRQVCKLSARKQKQVQE
ECCCEEEECCCCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FIGVITGKKKVA
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA