Click here to switch to the map view.

The map label for this gene is yibH [H]

Identifier: 218691880

GI number: 218691880

Start: 4201316

End: 4202452

Strand: Reverse

Name: yibH [H]

Synonym: ECED1_4279

Alternate gene names: 218691880

Gene position: 4202452-4201316 (Counterclockwise)

Preceding gene: 218691881

Following gene: 218691879

Centisome position: 80.67

GC content: 53.21

Gene sequence:

>1137_bases
ATGGATCTATTGATTGTTTTAACTTACGTGGCGCTGGCGTGGGCGGTCTTTAAAATCTTCCGCATTCCGGTGAATCAGTG
GACGCTGGCGACGGCGGCGCTGGGAGGCGTGTTTCTGGTGAGTGGTTTGATTTTGTTGATGAACTACAACCACCCTTACA
CTTTTACCGCGCAAAAGGCAGTGATAGCGATCCCCATCACGCCACAGGTGACGGGAATTGTTACTGAAGTCACCGACAAA
AATAATCAGCTTATTCAGAAGGGCGAGGTGCTTTTTAAGCTCGACCCGGTTCGTTACCAGGCGCGAGTTGACAGACTTCA
GGCTGACCTGATGACGGCAACGCATAATATAAAGACGCTGCGCGCGCAGCTCACTGAAGCGCAGGCCAACACCACCCAGG
TTTCAGCGGAGCGCGACCGTCTGTTTAAAAATTATCAACGTTACCTGAAAGGCAGCCAGGCGGCAGTGAATCCGTTCTCG
GAACGTGACATCGACGATGCGCGGCAAAACTTCCTCGCGCAGGACGCGCTGGTGAAAGGCTCGGTGGCGGAGCAGGCGCA
GATCCAGAGCCAGCTCGACAGTATGGTTAACGGCGAGCAGTCGCAGATTGTGAGCTTAAGAGCGCAACTTACTGAAGCAA
AATATAACCTTGAGCAGACTGTCATTCGCGCACCGAGCAATGGCTACGTCACTCAGGTACTGATCCGCCCAGGTACATAC
GCAGCTGCCTTGCCGCTACGTCCGGTGATGGTTTTCATCCCCGAGCAAAAACGGCAAATTGTCGCCCAATTTCGGCAGAA
CTCGCTGTTACGTCTGAAACCCGGCGATGATGCGGAAGTGGTGTTTAACGCGCTACCTGGGCAGGTGTTTCACGGCAAAC
TGACCAGTATTTTACCTGTCGTGCCAGGCGGTTCTTATCAGGCGCAGGGGGTATTGCAATCATTAACGGTCGTGCCCGGC
ACGGACGGTGTGCTGGGAACCATTGAACTGGACCCTAACGCTGATATCGATGCCTTACCCGACGGCATCTACGCCCAGGT
GGCAGTTTACTCCGACCATTTCAGCCATGTTTCGGTGATGCGGAAAGTGCTGCTAAGAATGACCAGTTGGATGCATTATC
TTTATTTGGATCATTGA

Upstream 100 bases:

>100_bases
ACGCGGAAATCGCCGCACTTTCTGACCGGATTTCCCGGCTGGAGCACCAACTCGCCGCCGAGAAAAAGACTGACTATTCC
ACGTTCCCGGAGATCTAATA

Downstream 100 bases:

>100_bases
GACTTGTATCACCTGTGTTTTGCGCGAGCCTGAGCCATACTGATATTTTTCCTCGCACAAAGGACTCGGCATGAAACTCG
TCGGTAGCTACACCAGCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDK
NNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTVVPG
TDGVLGTIELDPNADIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH

Sequences:

>Translated_378_residues
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDK
NNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTVVPG
TDGVLGTIELDPNADIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH
>Mature_378_residues
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDK
NNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTVVPG
TDGVLGTIELDPNADIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790024, Length=378, Percent_Identity=99.7354497354497, Blast_Score=767, Evalue=0.0,
Organism=Escherichia coli, GI1790012, Length=378, Percent_Identity=77.2486772486772, Blast_Score=620, Evalue=1e-179,
Organism=Escherichia coli, GI1790519, Length=254, Percent_Identity=27.1653543307087, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87081951, Length=254, Percent_Identity=24.4094488188976, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788711, Length=238, Percent_Identity=22.6890756302521, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 41945; Mature: 41945

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKA
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCE
VIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTL
EEEEECCCCCCEEEEEECCCCCHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
RAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCC
SVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCCCEEEEEECCCCE
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPV
EEECCCCEEEEEECCHHHHHHHHHHHCCEEEECCCCCHHHHEECCCCCCCCCCHHHHEEE
VPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNADIDALPDGIYAQVAVYSDHFSHVSVM
CCCCCCHHHHHHHHHEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEHHHHHHHHHH
RKVLLRMTSWMHYLYLDH
HHHHHHHHHHHHEEEECC
>Mature Secondary Structure
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKA
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCE
VIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTL
EEEEECCCCCCEEEEEECCCCCHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
RAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCC
SVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCCCEEEEEECCCCE
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPV
EEECCCCEEEEEECCHHHHHHHHHHHCCEEEECCCCCHHHHEECCCCCCCCCCHHHHEEE
VPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNADIDALPDGIYAQVAVYSDHFSHVSVM
CCCCCCHHHHHHHHHEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEHHHHHHHHHH
RKVLLRMTSWMHYLYLDH
HHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]