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The map label for this gene is lpfD [H]

Identifier: 218691834

GI number: 218691834

Start: 4148886

End: 4149272

Strand: Reverse

Name: lpfD [H]

Synonym: ECED1_4228

Alternate gene names: 218691834

Gene position: 4149272-4148886 (Counterclockwise)

Preceding gene: 218691835

Following gene: 218691832

Centisome position: 79.65

GC content: 43.93

Gene sequence:

>387_bases
ATGCGGTATGCGATAAATAAGGATATGCAGATGAAAATTAAAAACTTGTTGGCAGGTATGGTGCTTTTAGGGACGAGCAC
CTTTACCGGGAATATATGGGCTGCGGATTGGGGGCCGTGCAGGACGGCAAGTGGTGACCCCTTTATTTTTGTTATATCAT
TCACCAAAAATATTCAAAATCCGACGGATAATGTTACCGGGCAGACCTACCCTGATTTTTACCAATGGGCACTGGGTGAT
AAATATTCTGGTGTTTGTGAATGTCCATCACCGAACCCGACAGAAGCACGACCAACGCTATATAAAACTGAGTCAACATT
GGCGGCGGGGCATAACTCAACCTATTTTAAAATTACCAATAATCTTGAGGTTTCAACCCGGGGGTAA

Upstream 100 bases:

>100_bases
GGCGAATTGCAGGTGAGCTGGGGGCACGAGCAGGCGCAACGTTGCCGCGTGCCATTCCGCTTGCCAGAGAAAAAGGATAA
TTCGGGTATCGTGATGGTTA

Downstream 100 bases:

>100_bases
TGACTCCAACTTACTGATAGTGTTTTATGTTCAGATAATGCCCGATGACCTTGTCATGCAGCTCCACCGATTTTGAGAAC
GACAGTGACTTCCGTCCCAG

Product: putative minor fimbrial subunit (fragment)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MRYAINKDMQMKIKNLLAGMVLLGTSTFTGNIWAADWGPCRTASGDPFIFVISFTKNIQNPTDNVTGQTYPDFYQWALGD
KYSGVCECPSPNPTEARPTLYKTESTLAAGHNSTYFKITNNLEVSTRG

Sequences:

>Translated_128_residues
MRYAINKDMQMKIKNLLAGMVLLGTSTFTGNIWAADWGPCRTASGDPFIFVISFTKNIQNPTDNVTGQTYPDFYQWALGD
KYSGVCECPSPNPTEARPTLYKTESTLAAGHNSTYFKITNNLEVSTRG
>Mature_128_residues
MRYAINKDMQMKIKNLLAGMVLLGTSTFTGNIWAADWGPCRTASGDPFIFVISFTKNIQNPTDNVTGQTYPDFYQWALGD
KYSGVCECPSPNPTEARPTLYKTESTLAAGHNSTYFKITNNLEVSTRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14186; Mature: 14186

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYAINKDMQMKIKNLLAGMVLLGTSTFTGNIWAADWGPCRTASGDPFIFVISFTKNIQN
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCC
PTDNVTGQTYPDFYQWALGDKYSGVCECPSPNPTEARPTLYKTESTLAAGHNSTYFKITN
CCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCEEEECCCEEECCCCCEEEEEEC
NLEVSTRG
CEEEEECC
>Mature Secondary Structure
MRYAINKDMQMKIKNLLAGMVLLGTSTFTGNIWAADWGPCRTASGDPFIFVISFTKNIQN
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCC
PTDNVTGQTYPDFYQWALGDKYSGVCECPSPNPTEARPTLYKTESTLAAGHNSTYFKITN
CCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCEEEECCCEEECCCCCEEEEEEC
NLEVSTRG
CEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]