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The map label for this gene is lpfD [H]

Identifier: 218691832

GI number: 218691832

Start: 4147413

End: 4148297

Strand: Reverse

Name: lpfD [H]

Synonym: ECED1_4226

Alternate gene names: 218691832

Gene position: 4148297-4147413 (Counterclockwise)

Preceding gene: 218691834

Following gene: 218691831

Centisome position: 79.63

GC content: 43.95

Gene sequence:

>885_bases
TTGCCATGTTTTACGGCAATGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACGCCTTCAG
TAGCGGAGCAGGAAGGACATCTGATGGAAATGGAAGCCACGCAAGCACCTTAAAATCACCATCATACACTAAATCAGTAA
GTTGGCAGCATTACCCAACCCGGGTATATATTGCAAACGTGGGGAATGTACAGGTTCCATTTATCAATAAATCAAATAGC
CAGCCAGGAAGAGAGTGCGATCAACCAACTTTTGGCTGGACTACAGGGAGTAAAGGACAGCTCTCACTTTATATCGCTAA
ACCTTTTGTTGGGGAACAAAACATTCCGCAAACTATTATAGTTTCTGTGTTTGGTACAAAAAAGGAGAATGTTTATAGTT
CAGTTCCAATATCACAGGTGCTTCTTTCAGGAAAGGTCACCGTAACTCAAGGCTGTGAACTTGCCGCAGGGACATCATTG
GATATCGACTTTGGTGAGTATCAGGCCCATGATTTCAAAGGTCGAACCGGGCAGCCGCCACAAAATGTCCAGAAAATACA
AAAAGAATTAACGTTTAACTGTACTAATATTTCTGATGGTGTCCATATCTATCTGAGTCTTGAAGGTACGCCAAACGCGG
CTTACCCCAGCGCAATCAGTTTGGGCAACGCGGATGTTGGTGCGGTAATTGAGGATGGTAAAGGTAATATTCTTAAGCCG
AATGATAGTAATAGCTTATTAGAAATGAATCCCGGCTCACTGTACGAATATGTCAAACGTAAAGTAACAACCACCATTAC
TGCTTATCCGGTTAGTACAACCGGGAAATTACCCGCAGCCGGTGATTATAGCGGTGTGGCAACAATGCATGTTGAATTGG
ATTAG

Upstream 100 bases:

>100_bases
CCATAATGCGTGCACTGGCGCGACATCCGACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGCTGAGAG
GCGGTGTAAGTGAACTGTAG

Downstream 100 bases:

>100_bases
CACTGATGAAACGAACAATACTTGCATTATGCCTGCTACCTTTTTCCTTTTCGTCACTGTCGGCAACCACAGACTTAGGG
GCGAAAGGAACGTTGAAATT

Product: putative minor fimbrial subunit (fragment)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPTRVYIANVGNVQVPFINKSNS
QPGRECDQPTFGWTTGSKGQLSLYIAKPFVGEQNIPQTIIVSVFGTKKENVYSSVPISQVLLSGKVTVTQGCELAAGTSL
DIDFGEYQAHDFKGRTGQPPQNVQKIQKELTFNCTNISDGVHIYLSLEGTPNAAYPSAISLGNADVGAVIEDGKGNILKP
NDSNSLLEMNPGSLYEYVKRKVTTTITAYPVSTTGKLPAAGDYSGVATMHVELD

Sequences:

>Translated_294_residues
MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPTRVYIANVGNVQVPFINKSNS
QPGRECDQPTFGWTTGSKGQLSLYIAKPFVGEQNIPQTIIVSVFGTKKENVYSSVPISQVLLSGKVTVTQGCELAAGTSL
DIDFGEYQAHDFKGRTGQPPQNVQKIQKELTFNCTNISDGVHIYLSLEGTPNAAYPSAISLGNADVGAVIEDGKGNILKP
NDSNSLLEMNPGSLYEYVKRKVTTTITAYPVSTTGKLPAAGDYSGVATMHVELD
>Mature_293_residues
PCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPTRVYIANVGNVQVPFINKSNSQ
PGRECDQPTFGWTTGSKGQLSLYIAKPFVGEQNIPQTIIVSVFGTKKENVYSSVPISQVLLSGKVTVTQGCELAAGTSLD
IDFGEYQAHDFKGRTGQPPQNVQKIQKELTFNCTNISDGVHIYLSLEGTPNAAYPSAISLGNADVGAVIEDGKGNILKPN
DSNSLLEMNPGSLYEYVKRKVTTTITAYPVSTTGKLPAAGDYSGVATMHVELD

Specific function: Involved In Regulation Of Length And Mediation Of Adhesion Of Sfma Fimbriae (But Not Necessary For The Production Of Fimbriae). Seems To Be Mannose Binding Adhesin (By Similarity). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI145693100, Length=197, Percent_Identity=28.4263959390863, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787173, Length=216, Percent_Identity=26.8518518518519, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31351; Mature: 31220

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPT
CCCHHHHEEEEEEECCCEEEEEEEHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCEECCC
RVYIANVGNVQVPFINKSNSQPGRECDQPTFGWTTGSKGQLSLYIAKPFVGEQNIPQTII
EEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEE
VSVFGTKKENVYSSVPISQVLLSGKVTVTQGCELAAGTSLDIDFGEYQAHDFKGRTGQPP
EEEECCCCCCCCCCCCHHHHHHCCCEEEECCCCEECCCEEEEECCCCCCCCCCCCCCCCH
QNVQKIQKELTFNCTNISDGVHIYLSLEGTPNAAYPSAISLGNADVGAVIEDGKGNILKP
HHHHHHHHHHEEEEEECCCCEEEEEEEECCCCCCCCCEEECCCCCEEEEEECCCCCEECC
NDSNSLLEMNPGSLYEYVKRKVTTTITAYPVSTTGKLPAAGDYSGVATMHVELD
CCCCCEEEECCCHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure 
PCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPT
CCHHHHEEEEEEECCCEEEEEEEHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCEECCC
RVYIANVGNVQVPFINKSNSQPGRECDQPTFGWTTGSKGQLSLYIAKPFVGEQNIPQTII
EEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEE
VSVFGTKKENVYSSVPISQVLLSGKVTVTQGCELAAGTSLDIDFGEYQAHDFKGRTGQPP
EEEECCCCCCCCCCCCHHHHHHCCCEEEECCCCEECCCEEEEECCCCCCCCCCCCCCCCH
QNVQKIQKELTFNCTNISDGVHIYLSLEGTPNAAYPSAISLGNADVGAVIEDGKGNILKP
HHHHHHHHHHEEEEEECCCCEEEEEEEECCCCCCCCCEEECCCCCEEEEEECCCCCEECC
NDSNSLLEMNPGSLYEYVKRKVTTTITAYPVSTTGKLPAAGDYSGVATMHVELD
CCCCCEEEECCCHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]