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The map label for this gene is lpfE [H]

Identifier: 218691831

GI number: 218691831

Start: 4146883

End: 4147407

Strand: Reverse

Name: lpfE [H]

Synonym: ECED1_4225

Alternate gene names: 218691831

Gene position: 4147407-4146883 (Counterclockwise)

Preceding gene: 218691832

Following gene: 218691830

Centisome position: 79.61

GC content: 48.57

Gene sequence:

>525_bases
ATGAAACGAACAATACTTGCATTATGCCTGCTACCTTTTTCCTTTTCGTCACTGTCGGCAACCACAGACTTAGGGGCGAA
AGGAACGTTGAAATTCTCTCTTAAAATCAGCCAGGGAGCCTGTGAACTGGTAAAAGACAGTGTTGAAGTTGACATGGGAT
TAGCGGTTCTCAAAAAGCCAGTAAGAATCGGAACAGAACTTAATCCCACTACTTTTTCCATCGGTCTGAAAAACTGTAGC
GAAGTTGTCAGGGCTTACGTCACCATGGATGGAACACCCAATGCGGACGATCCAAATCTTTTTGCGCTGGACGCGGGTGG
TGCTACGGGCGTGGGGTTGAAAATTAAAACCTCTGCGGGAGTACAACAGTTCCCGAAAAATACGACACCGACGCCGATTG
AGTTCGCGATTAACGGTGATGGCGCGCATCAACTGAACTATATCGCCAGCTACGTGCCGCTGCGTGCTGATGCAACCATT
GGCCGCGCAGATGCGACGGTCGATTTTACGGTTCAGTACGAATAA

Upstream 100 bases:

>100_bases
CCACCATTACTGCTTATCCGGTTAGTACAACCGGGAAATTACCCGCAGCCGGTGATTATAGCGGTGTGGCAACAATGCAT
GTTGAATTGGATTAGCACTG

Downstream 100 bases:

>100_bases
TTTCGCTTCACCGGGGCTAGCTCACTGGCCCTTTTTACTGCTTTTTGTAACGCTAAAGTCTCTTTTCAAACTTGCATTTT
TGTAAATTTGTGCTTCGTGC

Product: LpfE protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MKRTILALCLLPFSFSSLSATTDLGAKGTLKFSLKISQGACELVKDSVEVDMGLAVLKKPVRIGTELNPTTFSIGLKNCS
EVVRAYVTMDGTPNADDPNLFALDAGGATGVGLKIKTSAGVQQFPKNTTPTPIEFAINGDGAHQLNYIASYVPLRADATI
GRADATVDFTVQYE

Sequences:

>Translated_174_residues
MKRTILALCLLPFSFSSLSATTDLGAKGTLKFSLKISQGACELVKDSVEVDMGLAVLKKPVRIGTELNPTTFSIGLKNCS
EVVRAYVTMDGTPNADDPNLFALDAGGATGVGLKIKTSAGVQQFPKNTTPTPIEFAINGDGAHQLNYIASYVPLRADATI
GRADATVDFTVQYE
>Mature_174_residues
MKRTILALCLLPFSFSSLSATTDLGAKGTLKFSLKISQGACELVKDSVEVDMGLAVLKKPVRIGTELNPTTFSIGLKNCS
EVVRAYVTMDGTPNADDPNLFALDAGGATGVGLKIKTSAGVQQFPKNTTPTPIEFAINGDGAHQLNYIASYVPLRADATI
GRADATVDFTVQYE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18389; Mature: 18389

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTILALCLLPFSFSSLSATTDLGAKGTLKFSLKISQGACELVKDSVEVDMGLAVLKKP
CCHHHEEEEHHHCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCHHHHHCC
VRIGTELNPTTFSIGLKNCSEVVRAYVTMDGTPNADDPNLFALDAGGATGVGLKIKTSAG
HHCCCCCCCEEEEEEHHHHHHHHHEEEEECCCCCCCCCCEEEEECCCCCCCCEEEECCCC
VQQFPKNTTPTPIEFAINGDGAHQLNYIASYVPLRADATIGRADATVDFTVQYE
HHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCEECCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MKRTILALCLLPFSFSSLSATTDLGAKGTLKFSLKISQGACELVKDSVEVDMGLAVLKKP
CCHHHEEEEHHHCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCHHHHHCC
VRIGTELNPTTFSIGLKNCSEVVRAYVTMDGTPNADDPNLFALDAGGATGVGLKIKTSAG
HHCCCCCCCEEEEEEHHHHHHHHHEEEEECCCCCCCCCCEEEEECCCCCCCCEEEECCCC
VQQFPKNTTPTPIEFAINGDGAHQLNYIASYVPLRADATIGRADATVDFTVQYE
HHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCEECCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]