| Definition | Escherichia coli ED1a chromosome, complete genome. |
|---|---|
| Accession | NC_011745 |
| Length | 5,209,548 |
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The map label for this gene is ygjK [H]
Identifier: 218691384
GI number: 218691384
Start: 3677921
End: 3680272
Strand: Direct
Name: ygjK [H]
Synonym: ECED1_3748
Alternate gene names: 218691384
Gene position: 3677921-3680272 (Clockwise)
Preceding gene: 218691383
Following gene: 218691385
Centisome position: 70.6
GC content: 54.59
Gene sequence:
>2352_bases ATGAAAATCAAAACCATTTTAACGCCAGTAGCCTGTGCTCTGCTGATGAGCTTTTCCGCCCATGCCGCTAACGCTGACAA TTATAAAAACGTGATTAACCGTACTGGCGCGCCGCAGTACATGAAGGATTACGATTACGACGATCACCAGCGTTTTAATC CGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGTTTTCCAGGCGTTGCG CTGCTGACGGAAGAATACATCAACTTTATGGCCAGCAATTTCGATCGCCTGACCGTCTGGCAAGACGGCAAGAAAGTCGA TTTCACGCTGGAGGCATACAGTATACCCGGCGCGCTGGTGCAAAAGTTGATATCGAAAGATGTACAGGTCGAAATGATTC TGCGCTTCGCCACGCCGCGCACATCACTACTGGAAACCAAAATCACCAGCGATAAACCGCTGGATCTGGTGTGGGATGGT GAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAGTACCCTGACTATCA GCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCATCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCG GTGAATCAGAATATCAGGTGCATAAATCCCTGCCAGTGCAGACTGAAATCAACGGCAATCGCTTTACCAGTAAGGCGCAT ATCAACGGTTCGACGACGCTCTATACCACCTACTCCCATCTGCTGACCGCTCAGGAAGTTAGCAAAGAGCAAATGCAGAT CCGCGATATTCTGGCGCGTCCGGCGTTTTATCTCACCGCCTCGCAGCAACGCTGGGAAGAGTATCTGAAGAAAGGGTTAA CCAATCCGGATGCGACGCCGGAACAGACGCGCGTCGCGGTGAAAGCCATCGAAACGCTCAACGGTAACTGGCGATCGCCG GGCGGTGCGGTGAAATATAACACCGTCACGCCGTCGGTGACCGGGCGCTGGTTCTCCGGCAATCAGACCTGGCCGTGGGA TACCTGGAAGCAGGCGTTTGCGATGGCGCATTTCAATCCGGATATCGCCAAAGAGAATATCCGCGCGGTCTTCTCCTGGC AGATCCAGCCAGGCGACAGCGTGCGTCCGCAGGATGTGGGCTTTGTCCCCGACCTGATAGCGTGGAACCTTAGCCCGGAG CGTGGCGGCGATGGCGGCAACTGGAACGAACGTAACACCAAACCCAGCCTTGCCGCCTGGTCGGTGATGGAAGTGTACAA CGTCACCCAGGATAAAAACTGGCTGGCAGAGATGTACCCGAAACTGGTGGCCTATCACGACTGGTGGCTACGTAACCGCG ATCACAACGGCAACGGCGTACCGGAATATGGCGCAACCCGCGATAAAGCCCACAATACTGAGAATGGCGAGATGCTGTTT ACAGTGAAAAAAGGCGCCAAAGAAGAGACGCAGTCTGGGCTGAACAACTACGCCCGTGTGGTGGAGAAAGGCCAGTACGA CAGTCTGGAAATTCCGGCACAGGTTGCGGCGTCGTGGGAATCGGGGCGTGATGATGCCGCCGTCTTTGGGTTTATCGACA AGGAACAGTTGGATAAATATGTCGCTAACGGCGGCAAACGTAGCGACTGGACGGTGAAATTCGCCGAGAACCGCAGTCAG GACGGAACGTTGCTGGGCTACTCGCTATTGCAGGAGTCGGTGGATCAGGCCAGCTATATGTACAGCGATAACCATTATCT GGCGGAGATGGCGACGATTCTCAGTAAGCCGGAAGAGGCCAAACGCTATCGTCAGTTAGCACAACAGCTCGCGGACTACA TCAACACTTGTATGTTCGACCCGACTACACAGTTCTACTATGACGTGCGTATTGAAGATAAACCGCTGGCGAACGGCTGC GCGGGCAAACCGATTGTCGAGCGCGGTAAAGGGCCGGAAGGCTGGTCACCGCTGTTTAACGGTGCGGCAACGCAGGCCAA CGCCGACGCGGTGGTGAAGGTGATGCTGGATCCGAAAGAATTCAACACCTTTGTCCCGCTGGGGACGGCAGCGTTAACCA ACCCAGCCTTTGGCGCAGATATCTACTGGCGCGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAG CGTTACGGTTATCGCGATGACGCCCTGAAACTGGCTGATACGTTCTTCCGGCACGCCAAAGGGTTAACCGCCGATGGCCC GATTCAGGAGAATTACAACCCGCTCACTGGCGCGCAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATA TGTTGTATAACGATTTTTTCCGTAAGCAGTAA
Upstream 100 bases:
>100_bases GCTTTTGATAGCCGCTTCTACATGAAAAATGCCTCTCACGATCCCAGCGACCAACTCTTCCTGATGCAATATTTTTACTG GTAATAAGGACAGTAATCTC
Downstream 100 bases:
>100_bases TTTGCAACGGCTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGCAATCCCCCAGGCCGGATAAGACGCGTCA AGCGTCGCATCCGGCGTTAC
Product: putative glycosyl hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 783; Mature: 783
Protein sequence:
>783_residues MKIKTILTPVACALLMSFSAHAANADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGAWHGHLLPDGPNTMGGFPGVA LLTEEYINFMASNFDRLTVWQDGKKVDFTLEAYSIPGALVQKLISKDVQVEMILRFATPRTSLLETKITSDKPLDLVWDG ELLEKLEAKEGKPLSDKTIAGEYPDYQRKISATRDGLKVIFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAH INGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDATPEQTRVAVKAIETLNGNWRSP GGAVKYNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHFNPDIAKENIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPE RGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKNWLAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTENGEMLF TVKKGAKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQ DGTLLGYSLLQESVDQASYMYSDNHYLAEMATILSKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGC AGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGME RYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQ
Sequences:
>Translated_783_residues MKIKTILTPVACALLMSFSAHAANADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGAWHGHLLPDGPNTMGGFPGVA LLTEEYINFMASNFDRLTVWQDGKKVDFTLEAYSIPGALVQKLISKDVQVEMILRFATPRTSLLETKITSDKPLDLVWDG ELLEKLEAKEGKPLSDKTIAGEYPDYQRKISATRDGLKVIFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAH INGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDATPEQTRVAVKAIETLNGNWRSP GGAVKYNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHFNPDIAKENIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPE RGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKNWLAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTENGEMLF TVKKGAKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQ DGTLLGYSLLQESVDQASYMYSDNHYLAEMATILSKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGC AGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGME RYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQ >Mature_783_residues MKIKTILTPVACALLMSFSAHAANADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGAWHGHLLPDGPNTMGGFPGVA LLTEEYINFMASNFDRLTVWQDGKKVDFTLEAYSIPGALVQKLISKDVQVEMILRFATPRTSLLETKITSDKPLDLVWDG ELLEKLEAKEGKPLSDKTIAGEYPDYQRKISATRDGLKVIFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAH INGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDATPEQTRVAVKAIETLNGNWRSP GGAVKYNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHFNPDIAKENIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPE RGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKNWLAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTENGEMLF TVKKGAKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQ DGTLLGYSLLQESVDQASYMYSDNHYLAEMATILSKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGC AGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGME RYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789462, Length=783, Percent_Identity=98.3397190293742, Blast_Score=1607, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR001661 [H]
Pfam domain/function: PF01204 Trehalase [H]
EC number: NA
Molecular weight: Translated: 88419; Mature: 88419
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIKTILTPVACALLMSFSAHAANADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGA CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCCHHCCCC WHGHLLPDGPNTMGGFPGVALLTEEYINFMASNFDRLTVWQDGKKVDFTLEAYSIPGALV CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCHHHH QKLISKDVQVEMILRFATPRTSLLETKITSDKPLDLVWDGELLEKLEAKEGKPLSDKTIA HHHHCCCCEEEEEEEECCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCC GEYPDYQRKISATRDGLKVIFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCEEEECCCCEEEEEEE INGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDATP CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCCH EQTRVAVKAIETLNGNWRSPGGAVKYNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHFNP HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHHCCH DIAKENIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAW HHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCHHHH SVMEVYNVTQDKNWLAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTENGEMLF HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE TVKKGAKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKY EECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCEEEECCCHHHHHHH VANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILSKPEEA HHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCHHH KRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFN HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCHHHC GAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGME CCCCCCCCCEEEEEEECHHHCCCCCCCCHHHHCCCCCCCCEEECCEEEHHHHHHHHHHHH RYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFF HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH RKQ HCC >Mature Secondary Structure MKIKTILTPVACALLMSFSAHAANADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGA CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCCHHCCCC WHGHLLPDGPNTMGGFPGVALLTEEYINFMASNFDRLTVWQDGKKVDFTLEAYSIPGALV CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCHHHH QKLISKDVQVEMILRFATPRTSLLETKITSDKPLDLVWDGELLEKLEAKEGKPLSDKTIA HHHHCCCCEEEEEEEECCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCC GEYPDYQRKISATRDGLKVIFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCEEEECCCCEEEEEEE INGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDATP CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCCH EQTRVAVKAIETLNGNWRSPGGAVKYNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHFNP HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHHCCH DIAKENIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAW HHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCHHHH SVMEVYNVTQDKNWLAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTENGEMLF HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE TVKKGAKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKY EECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCEEEECCCHHHHHHH VANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILSKPEEA HHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCHHH KRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFN HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCHHHC GAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGME CCCCCCCCCEEEEEEECHHHCCCCCCCCHHHHCCCCCCCCEEECCEEEHHHHHHHHHHHH RYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFF HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH RKQ HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]