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The map label for this gene is yghF [H]

Identifier: 218691256

GI number: 218691256

Start: 3536253

End: 3537212

Strand: Reverse

Name: yghF [H]

Synonym: ECED1_3613

Alternate gene names: 218691256

Gene position: 3537212-3536253 (Counterclockwise)

Preceding gene: 218691257

Following gene: 218691255

Centisome position: 67.9

GC content: 51.25

Gene sequence:

>960_bases
TTGGCGCGGGTTGTTTTTCGTGACGTACGAATTTATCTCATTCAGTTGCTGACAAAAATTCGTCACACTCTTAGCCAGAG
ACAATCTCTTAATACAGACAAAGAGCATCTGCGAAAAATGGTGCGCGGGATGTTCTGGCTGATGCTGCTTATTATTTCTG
CAAAAATGGCGTATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATATACGGCGGTTTCCTCATCGGCGAATAAACCG
CTCCGTGCGGATGCAAAACCGTTCGATAAAAATGACGTGCAATTAGTCAGCCAACAAAACTGGTTTGGCAAATATCAACC
CGTCGCCGCACCGGTAAAACAACCTGAATCTGCGCCTGTGGCAGAAACGCGTCTTAATGTGGTGCTGCGTGGGATCGCCT
TTGGTGCCAGACCCGGCGCGGTTATTGAAGAAGGCGGCAAACAGCAGGTCTATTTGCAGGGGGAACGGCTTGGCTCTCAC
AACGCAGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGCTATCAGGGGAAAATGGAACGTCTGAGTCTGGCAGA
GGAGGAACGCCCCCCTGTGGCGGTGACCAGCAAAAAAGCCGCCAGTGACGAAGCAAAGCAAGCTGTTGCTGAGCCTGCTG
CCAGTGCGCCAGTGGAGATCCCGGCTGCCGTGCGTCAGGCACTGGCGAAAGATCCGCAGAAAATTTTTAACTATATCCAG
CTTACGCCTGTGCGTAAGGAGGGGATTGTCGGTTATGCAGTGAAACCGGGGGCAGATCGTTCTCTGTTCGATGCCAGCGG
TTTTAAGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGC
AGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCTACGACATTTCCATCGCACTGCGCTAA

Upstream 100 bases:

>100_bases
GCATAACGATTAATGATACACGTACAGGTAACCAGTATCAGCGGAAACTGGATCGTACCACCTGTGGAATAGTCAAAGCA
TAACGTCGGGTAGATATAAA

Downstream 100 bases:

>100_bases
CCGCATTTAATCCAGGAGAATCATTCATCGTGTTTTGGCGTGATATGACGTTGTCTATCTGGCGTAAGAAGACAACTGGC
CTCAAAACAAAAAAGCGTTT

Product: putative type II secretion protein GspC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MARVVFRDVRIYLIQLLTKIRHTLSQRQSLNTDKEHLRKMVRGMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSSSANKP
LRADAKPFDKNDVQLVSQQNWFGKYQPVAAPVKQPESAPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSH
NAVIEEINRDHVMLRYQGKMERLSLAEEERPPVAVTSKKAASDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQ
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARYDISIALR

Sequences:

>Translated_319_residues
MARVVFRDVRIYLIQLLTKIRHTLSQRQSLNTDKEHLRKMVRGMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSSSANKP
LRADAKPFDKNDVQLVSQQNWFGKYQPVAAPVKQPESAPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSH
NAVIEEINRDHVMLRYQGKMERLSLAEEERPPVAVTSKKAASDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQ
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARYDISIALR
>Mature_318_residues
ARVVFRDVRIYLIQLLTKIRHTLSQRQSLNTDKEHLRKMVRGMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSSSANKPL
RADAKPFDKNDVQLVSQQNWFGKYQPVAAPVKQPESAPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHN
AVIEEINRDHVMLRYQGKMERLSLAEEERPPVAVTSKKAASDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQL
TPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARYDISIALR

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG3031

COG function: function code U; Type II secretory pathway, component PulC

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR001639 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35668; Mature: 35537

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS01141 T2SP_C

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVVFRDVRIYLIQLLTKIRHTLSQRQSLNTDKEHLRKMVRGMFWLMLLIISAKMAYSL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRYFSFSAEYTAVSSSANKPLRADAKPFDKNDVQLVSQQNWFGKYQPVAAPVKQPESAPV
HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCH
AETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHNAVIEEINRDHVMLRYQGKM
HHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEEECCCH
ERLSLAEEERPPVAVTSKKAASDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQ
HHHHHHHHCCCCEEEECCHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDS
CCEEHHCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCC
IQLTVLRKGARYDISIALR
EEEEEEECCCCEEEEEEEC
>Mature Secondary Structure 
ARVVFRDVRIYLIQLLTKIRHTLSQRQSLNTDKEHLRKMVRGMFWLMLLIISAKMAYSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRYFSFSAEYTAVSSSANKPLRADAKPFDKNDVQLVSQQNWFGKYQPVAAPVKQPESAPV
HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCH
AETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHNAVIEEINRDHVMLRYQGKM
HHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEEECCCH
ERLSLAEEERPPVAVTSKKAASDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQ
HHHHHHHHCCCCEEEECCHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDS
CCEEHHCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCC
IQLTVLRKGARYDISIALR
EEEEEEECCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]