Click here to switch to the map view.

The map label for this gene is epsD [H]

Identifier: 218691255

GI number: 218691255

Start: 3534163

End: 3536223

Strand: Reverse

Name: epsD [H]

Synonym: ECED1_3612

Alternate gene names: 218691255

Gene position: 3536223-3534163 (Counterclockwise)

Preceding gene: 218691256

Following gene: 218691254

Centisome position: 67.88

GC content: 54.54

Gene sequence:

>2061_bases
GTGTTTTGGCGTGATATGACGTTGTCTATCTGGCGTAAGAAGACAACTGGCCTCAAAACAAAAAAGCGTTTACTGCCGCT
GATGCTGGCAGCGGCATTGTGTAGTTCACCGGTCTGGGCGGAAGAAGCCACTTTCACCGCTAATTTTAAAGATACCGACC
TGAAATCGTTCATCGAAACCGTCGGCGCTAACCTTAATAAAACCATCATTATGGGGCCGGGCGTTCAGGGGAAAGTGAGT
ATTCGCACTATGACTCCGCTCAATGAACGCCAGTATTACCAGTTATTCCTTAACCTGCTGGAAGCACAGGGGTATGCGGT
CGTACCGATGGAAAACGACGTGCTGAAGGTGGTGAAATCAAGCGCCGTGAAAGTCGAGCCGCTGCCGCTGGTCGGTGAAG
GCAGCGACAACTACGCGGGCGATGAAATGGTCACCAAAGTCGTGCCGGTACGCAATGTGTCGGTACGCGAGCTGGCACCG
ATTCTGCGCCAGATGATTGACAGCGCAGGCTCAGGCAACGTTGTTAATTACGATCCCTCCAACGTGATTATGCTTACCGG
ACGCGCCTCCGTTGTGGAGCGCCTGACGGAAGTGATCCAGCGCGTGGATCACGCGGGTAATCGCACCGAAGAGGTGATCC
CGCTGGATAACGCCTCAGCCTCGGAAATTGCCCGCGTGCTGGAAAGCCTGACCAAAAACAGCGGCGAGAACCAGCCAGCA
ACGCTGAAATCTCAAATTGTCGCCGATGAACGCACCAACAGCGTGATTGTCAGTGGTGACCCCGCCACGCGAGACAAAAT
GCGCCGTCTGATCCGTCGGCTGGATTCAGAAATGGAGCGCAGCGGCAACAGCCAGGTGTTCTATCTCAAATATAGCAAAG
CGGAAGATCTGGTCGATGTGCTGAAGCAGGTCAGCGGTACGCTCACGGCGGCTAAAGAAGAGGCGGAAGGCACGGTTGGT
AGCGGGCGTGAGGTTGTCTCCATCGCCGCCAGCAAACACAGTAATGCCCTGATTGTTACCGCGCCGCAGGACATCATGCA
GTCGCTGCAAAGCGTGATTGAACAACTGGATATTCGCCGTGCTCAGGTGCATGTCGAGGCGTTAATCGTGGAAGTTGCCG
AAGGCAGCAATATCAACTTCGGCGTGCAGTGGGGGTCAAAAGATGCCGGATTAATGCAGTTTGCCAACGGTACGCAAATC
CCTATTGGTACGCTGGGGGCAGCGATTTCTGCAGCCAAGCCGCAGAAAGGTTCCACGGTGATCAGCGAAAACGGTGCTAC
CACCATAAATCCGGATACTAACGGCGATCTCTCCACGCTCGCTCAGCTTCTTTCTGGCTTTAGCGGTACGGCGGTTGGCG
TGGTGAAAGGCGACTGGATGGCGCTGGTACAGGCGGTCAAAAACGACTCCAGCTCGAACGTGCTCTCCACGCCGAGTATC
ACCACGCTGGACAACCAGGAAGCCTTCTTCATGGTGGGCCAGGACGTTCCGGTATTAACCGGCTCTACCGTTGGTTCCAA
TAACAGCAATCCTTTCAATACGGTAGAGAGGAAAAAAGTCGGCATCATGCTGAAAGTCACGCCGCAGATTAACGAAGGTA
ACGCGGTACAGATGGTGATTGAGCAGGAAGTCTCGAAAGTGGAAGGGCAGACCAGTCTCGATGTCGTGTTTGGCGAGCGC
AAACTGAAAACCACCGTGCTGGCTAACGATGGTGAGCTGATCGTGCTTGGCGGTCTGATGGACGACCAGGCGGGAGAAAG
CGTGGCGAAAGTGCCGCTGCTGGGCGATATCCCATTGATTGGTAACCTGTTTAAATCGACGGCGGATAAAAAAGAAAAAC
GTAACCTGATGGTGTTTATCCGTCCGACCATTCTGCGTGACGGTATGGCGGCAGACGGCGTGTCGCAGCGCAAATATAAC
TACATGCGCGCCGAGCAAATCTACCGCGATGAGCAAGGCTTAAGCCTGATGCCGCACACCGCGCAGCCGATATTGCCAGC
GCAAAATCAGGCCTTACCGCCGGAAGTTCGTGCGTTTCTTAATGCCGGGAGAACGCGTTAA

Upstream 100 bases:

>100_bases
CAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCTACGACATTTCCATCGCACTGCGCTAACCGCATTTA
ATCCAGGAGAATCATTCATC

Downstream 100 bases:

>100_bases
TGGTGCCTGTAGCACAGGAAACCACCGCTAACACCGTGCGTCTGCCCTACAGTTTCAGCCGTCGGTTTAGCCTGGTGGCA
TGGTGCGAAGCGTCGCTGGA

Product: general secretion pathway protein D

Products: NA

Alternate protein names: Cholera toxin secretion protein epsD [H]

Number of amino acids: Translated: 686; Mature: 686

Protein sequence:

>686_residues
MFWRDMTLSIWRKKTTGLKTKKRLLPLMLAAALCSSPVWAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVS
IRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAVKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAP
ILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA
TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVG
SGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGVQWGSKDAGLMQFANGTQI
PIGTLGAAISAAKPQKGSTVISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI
TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVVFGER
KLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYN
YMRAEQIYRDEQGLSLMPHTAQPILPAQNQALPPEVRAFLNAGRTR

Sequences:

>Translated_686_residues
MFWRDMTLSIWRKKTTGLKTKKRLLPLMLAAALCSSPVWAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVS
IRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAVKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAP
ILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA
TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVG
SGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGVQWGSKDAGLMQFANGTQI
PIGTLGAAISAAKPQKGSTVISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI
TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVVFGER
KLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYN
YMRAEQIYRDEQGLSLMPHTAQPILPAQNQALPPEVRAFLNAGRTR
>Mature_686_residues
MFWRDMTLSIWRKKTTGLKTKKRLLPLMLAAALCSSPVWAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVS
IRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAVKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAP
ILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA
TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVG
SGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGVQWGSKDAGLMQFANGTQI
PIGTLGAAISAAKPQKGSTVISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI
TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVVFGER
KLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYN
YMRAEQIYRDEQGLSLMPHTAQPILPAQNQALPPEVRAFLNAGRTR

Specific function: Required for secretion of cholera toxin through the outer membrane [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=654, Percent_Identity=44.8012232415902, Blast_Score=530, Evalue=1e-151,
Organism=Escherichia coli, GI1789793, Length=307, Percent_Identity=24.7557003257329, Blast_Score=79, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845
- InterPro:   IPR001814 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 74224; Mature: 74224

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFWRDMTLSIWRKKTTGLKTKKRLLPLMLAAALCSSPVWAEEATFTANFKDTDLKSFIET
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH
VGANLNKTIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKS
HCCCCCCEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
SAVKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPS
CCEEECCCEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCC
NVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA
CEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDV
HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH
LKQVSGTLTAAKEEAEGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRR
HHHHHCHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHH
AQVHVEALIVEVAEGSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTV
HHHEEEHEEEEEECCCCEEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCEE
ISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI
EECCCCEEECCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCEECCCCE
TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVI
EEECCCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHEEEEEEECCCCCCCCEEEHHH
EQEVSKVEGQTSLDVVFGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLI
HHHHHHHCCCCEEEEEECCCEEEEEEEECCCCEEEECCCCCCCCCCCEEECCCCCCCCHH
GNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYNYMRAEQIYRDEQGLSLMPHT
HHHHHHHHCHHHCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCC
AQPILPAQNQALPPEVRAFLNAGRTR
CCCCCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MFWRDMTLSIWRKKTTGLKTKKRLLPLMLAAALCSSPVWAEEATFTANFKDTDLKSFIET
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH
VGANLNKTIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKS
HCCCCCCEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
SAVKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPS
CCEEECCCEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCC
NVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA
CEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDV
HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH
LKQVSGTLTAAKEEAEGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRR
HHHHHCHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHH
AQVHVEALIVEVAEGSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTV
HHHEEEHEEEEEECCCCEEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCEE
ISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI
EECCCCEEECCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCEECCCCE
TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVI
EEECCCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHEEEEEEECCCCCCCCEEEHHH
EQEVSKVEGQTSLDVVFGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLI
HHHHHHHCCCCEEEEEECCCEEEEEEEECCCCEEEECCCCCCCCCCCEEECCCCCCCCHH
GNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYNYMRAEQIYRDEQGLSLMPHT
HHHHHHHHCHHHCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCC
AQPILPAQNQALPPEVRAFLNAGRTR
CCCCCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]