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The map label for this gene is yghD [H]

Identifier: 218691246

GI number: 218691246

Start: 3526751

End: 3527287

Strand: Reverse

Name: yghD [H]

Synonym: ECED1_3603

Alternate gene names: 218691246

Gene position: 3527287-3526751 (Counterclockwise)

Preceding gene: 218691247

Following gene: 218691245

Centisome position: 67.71

GC content: 54.0

Gene sequence:

>537_bases
ATGTTACGCGATAAATTTATTCACTATTTTCAGCAATGGCGTGAACGCCAGTTAAGCCGTGGCGAACACTGGCTGACACA
ACACCTGGCGGGGCGTTCTCCGCGTGAAAAAGGCATGTTACTGGCAGCGGTAGTGTTCCTGTTTAGCGCCGGATATTACG
TTCTCATCTGGCAGCCGTTGAGCGAACGGATTGAGCAACAGGAGACGATGTTGCAGCAGCTGGTGGCGATGAACGCGCGA
CTGAAGAGCGCCGCGCCGGATATTATTGCGGCGCGAAAATCCGGCACGACAACGCCAGCACAGGTATCGCGGGTCATCAG
CGACAGTGCTTCGGCGCATTCAGTGGTCATTAAGCGAATAGCCGAGCGCGGGGAGAATATTCAGGTCTGGATAGATCCGG
TGGTGTTTAATGACCTGCTGAACTGGTTAAACGCACTGGATGAAAAATATGCGCTGCGGGTGACACAAATTGATGTCAGT
GCTGCTGAGAAGCCTGGGATGGTGAATGTGCAGCGACTGGAGTTTGGGCGGGGGTAG

Upstream 100 bases:

>100_bases
CTGCGTAGCGCACTGGCGGTAGATTATGTTGTGCAACAGGACGCGTTACAGAAAGAGGGTGATGCGGTTTCCGGCGGCGT
AACGTTGCGGAGGAAATAAC

Downstream 100 bases:

>100_bases
GTATTGCCATTTCCTTAACCCCACCTGATAACCCTTAGCCCAATGGTGAGTGCGGAACTGTCAAACCCGCTCACCGGGCT
GAGTTTCGATGTAGCAAGAA

Product: putative general secretion pathway protein YghD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLRDKFIHYFQQWRERQLSRGEHWLTQHLAGRSPREKGMLLAAVVFLFSAGYYVLIWQPLSERIEQQETMLQQLVAMNAR
LKSAAPDIIAARKSGTTTPAQVSRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDVS
AAEKPGMVNVQRLEFGRG

Sequences:

>Translated_178_residues
MLRDKFIHYFQQWRERQLSRGEHWLTQHLAGRSPREKGMLLAAVVFLFSAGYYVLIWQPLSERIEQQETMLQQLVAMNAR
LKSAAPDIIAARKSGTTTPAQVSRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDVS
AAEKPGMVNVQRLEFGRG
>Mature_178_residues
MLRDKFIHYFQQWRERQLSRGEHWLTQHLAGRSPREKGMLLAAVVFLFSAGYYVLIWQPLSERIEQQETMLQQLVAMNAR
LKSAAPDIIAARKSGTTTPAQVSRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDVS
AAEKPGMVNVQRLEFGRG

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG3149

COG function: function code U; Type II secretory pathway, component PulM

Gene ontology:

Cell location: Cell inner membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP M family [H]

Homologues:

Organism=Escherichia coli, GI1789339, Length=178, Percent_Identity=94.3820224719101, Blast_Score=348, Evalue=9e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007690
- InterPro:   IPR023229 [H]

Pfam domain/function: PF04612 GspM [H]

EC number: NA

Molecular weight: Translated: 20302; Mature: 20302

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRDKFIHYFQQWRERQLSRGEHWLTQHLAGRSPREKGMLLAAVVFLFSAGYYVLIWQPL
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECHH
SERIEQQETMLQQLVAMNARLKSAAPDIIAARKSGTTTPAQVSRVISDSASAHSVVIKRI
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCCCCCCHHHHHHHHHCCCHHHHHHHHHH
AERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG
HHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MLRDKFIHYFQQWRERQLSRGEHWLTQHLAGRSPREKGMLLAAVVFLFSAGYYVLIWQPL
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECHH
SERIEQQETMLQQLVAMNARLKSAAPDIIAARKSGTTTPAQVSRVISDSASAHSVVIKRI
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCCCCCCHHHHHHHHHCCCHHHHHHHHHH
AERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG
HHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]