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The map label for this gene is traC [H]

Identifier: 218691181

GI number: 218691181

Start: 3460061

End: 3461143

Strand: Reverse

Name: traC [H]

Synonym: ECED1_3533

Alternate gene names: 218691181

Gene position: 3461143-3460061 (Counterclockwise)

Preceding gene: 218691182

Following gene: 218691180

Centisome position: 66.44

GC content: 52.17

Gene sequence:

>1083_bases
GTGGTAATTCTGGCCAGTCTGATTTTCGTTATTAATTTAACCGTATGGTGCATGTTCACCGTACGGGGAGCATGCATCTT
TTTTATGGAGCGTGCTCTTATGAAAACGAAAAAACATACTTCATCTCCCGTGAACAAAACCCCGGAGCGTGACCTGTATC
AGTTGGTGACGGACAGGGTGATTGAGGCCATCGAAAAGGGCGTAGCCCCCTGGAAACGTCCATGGCGCTCAGTACGGACT
CACAGCGGCGATCCAATGATGCCGGTTAATGCACTGACACGCAGCGCTTACCGTGGGATCAATGTGTTGCTGTTGTGGCT
CGCCGCAGAAGAAGCCGGTTACAGCAGTAACTGCTGGTTGACGTACCGTCAGGCTCAGGCGCTGGGTGGGCAGGTCCGTA
AGGGCGAGAAGTCCACAATGGCCGTGATATACAAAAGCTGGCATAAGCAGGATGAGGATGAGAACGGCAACCGGATATTC
GACGCAGAGGGTAACCCCGTTATGGTTGATGTACCGGTGCTGAAAGCGAATCCTCTCTTTAACGTTGAACAGTGTGATGG
ATTGTCGCTGCCGGAGGTGGCGACAACCGTCACTGAGAACGGTGCGAACGACACGCTGAATGCTGTGGCTGATCGTGTAC
TGACGATGGTGAATGCCTGCGGTGTGAAGATTCATTCTTTACCTCAGGACCGGGCGTATTACACCCCGGTATTTGATCGT
ATCGTCCTGCCGCTCTCGTCACAGTTCACTTCAGCGGAAGATTACTGGTCCACATTACTGCATGAGCTGGTACACAGTAC
CGGTCATGCGAAACGTCTTAACCGGGAAGGGATAGTTTCCTCCGGTGGGAGCTATGGCGATGAACGTTATGCGTTCGAAG
AGCTTATCGCCGAAATGGGCAGTGCCTTTCTGTGCGCTCAACTGGGTGTCACCGGAAATGTGCAGCATGAGAATTATATT
GGCGCATGGCTGAAAATTCTTCGTGCTGACAAAAAAGCGCTGTTCAGTGCATGTCGACAGGCCAGAGAGGCAACGGAATA
CCTTCTTTCCGTACACGATACGCCGGCAGAAAAAGCGGCGTAA

Upstream 100 bases:

>100_bases
CCGGTGATTACTGGTATGACGTGGATGACGTAAAAGCGTGGGTCAGCGATACGCTGAAGACGTTTGATTTTGAACGTCGT
TCACTGGTGATGCTGGCGTT

Downstream 100 bases:

>100_bases
TGCTTAACAATCGCGGGTGAACAATCTGAACTCTGTTGTTCACCGCCCGGAGGGCATCGTTCCTTCGGACGGTGTGCTCT
TTCATCAGAAAGAATCAGAC

Product: hypothetical protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MVILASLIFVINLTVWCMFTVRGACIFFMERALMKTKKHTSSPVNKTPERDLYQLVTDRVIEAIEKGVAPWKRPWRSVRT
HSGDPMMPVNALTRSAYRGINVLLLWLAAEEAGYSSNCWLTYRQAQALGGQVRKGEKSTMAVIYKSWHKQDEDENGNRIF
DAEGNPVMVDVPVLKANPLFNVEQCDGLSLPEVATTVTENGANDTLNAVADRVLTMVNACGVKIHSLPQDRAYYTPVFDR
IVLPLSSQFTSAEDYWSTLLHELVHSTGHAKRLNREGIVSSGGSYGDERYAFEELIAEMGSAFLCAQLGVTGNVQHENYI
GAWLKILRADKKALFSACRQAREATEYLLSVHDTPAEKAA

Sequences:

>Translated_360_residues
MVILASLIFVINLTVWCMFTVRGACIFFMERALMKTKKHTSSPVNKTPERDLYQLVTDRVIEAIEKGVAPWKRPWRSVRT
HSGDPMMPVNALTRSAYRGINVLLLWLAAEEAGYSSNCWLTYRQAQALGGQVRKGEKSTMAVIYKSWHKQDEDENGNRIF
DAEGNPVMVDVPVLKANPLFNVEQCDGLSLPEVATTVTENGANDTLNAVADRVLTMVNACGVKIHSLPQDRAYYTPVFDR
IVLPLSSQFTSAEDYWSTLLHELVHSTGHAKRLNREGIVSSGGSYGDERYAFEELIAEMGSAFLCAQLGVTGNVQHENYI
GAWLKILRADKKALFSACRQAREATEYLLSVHDTPAEKAA
>Mature_360_residues
MVILASLIFVINLTVWCMFTVRGACIFFMERALMKTKKHTSSPVNKTPERDLYQLVTDRVIEAIEKGVAPWKRPWRSVRT
HSGDPMMPVNALTRSAYRGINVLLLWLAAEEAGYSSNCWLTYRQAQALGGQVRKGEKSTMAVIYKSWHKQDEDENGNRIF
DAEGNPVMVDVPVLKANPLFNVEQCDGLSLPEVATTVTENGANDTLNAVADRVLTMVNACGVKIHSLPQDRAYYTPVFDR
IVLPLSSQFTSAEDYWSTLLHELVHSTGHAKRLNREGIVSSGGSYGDERYAFEELIAEMGSAFLCAQLGVTGNVQHENYI
GAWLKILRADKKALFSACRQAREATEYLLSVHDTPAEKAA

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG4227

COG function: function code L; Antirestriction protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 40120; Mature: 40120

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVILASLIFVINLTVWCMFTVRGACIFFMERALMKTKKHTSSPVNKTPERDLYQLVTDRV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
IEAIEKGVAPWKRPWRSVRTHSGDPMMPVNALTRSAYRGINVLLLWLAAEEAGYSSNCWL
HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHEEHHHHCCCCCCCEE
TYRQAQALGGQVRKGEKSTMAVIYKSWHKQDEDENGNRIFDAEGNPVMVDVPVLKANPLF
EEHHHHHHCCHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEEEECCCCCC
NVEQCDGLSLPEVATTVTENGANDTLNAVADRVLTMVNACGVKIHSLPQDRAYYTPVFDR
CHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHCHHHHH
IVLPLSSQFTSAEDYWSTLLHELVHSTGHAKRLNREGIVSSGGSYGDERYAFEELIAEMG
HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC
SAFLCAQLGVTGNVQHENYIGAWLKILRADKKALFSACRQAREATEYLLSVHDTPAEKAA
CHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure
MVILASLIFVINLTVWCMFTVRGACIFFMERALMKTKKHTSSPVNKTPERDLYQLVTDRV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
IEAIEKGVAPWKRPWRSVRTHSGDPMMPVNALTRSAYRGINVLLLWLAAEEAGYSSNCWL
HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHEEHHHHCCCCCCCEE
TYRQAQALGGQVRKGEKSTMAVIYKSWHKQDEDENGNRIFDAEGNPVMVDVPVLKANPLF
EEHHHHHHCCHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEEEECCCCCC
NVEQCDGLSLPEVATTVTENGANDTLNAVADRVLTMVNACGVKIHSLPQDRAYYTPVFDR
CHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHCHHHHH
IVLPLSSQFTSAEDYWSTLLHELVHSTGHAKRLNREGIVSSGGSYGDERYAFEELIAEMG
HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC
SAFLCAQLGVTGNVQHENYIGAWLKILRADKKALFSACRQAREATEYLLSVHDTPAEKAA
CHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]