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The map label for this gene is traF

Identifier: 218691170

GI number: 218691170

Start: 3446437

End: 3447687

Strand: Direct

Name: traF

Synonym: ECED1_3520

Alternate gene names: NA

Gene position: 3446437-3447687 (Clockwise)

Preceding gene: 218691169

Following gene: 218691172

Centisome position: 66.16

GC content: 57.07

Gene sequence:

>1251_bases
GTGCCACGCCTTTGCTATACCCGAAAGACCTTAATACAGGAAACTGAAATGATGATGAAAAAGCATATTACCCGTACACT
TGTCGCGTCTGCCGTTTTATTTTCCTTTAATTCAGCGGCCGCCACCTCATATTCTGAAGCCCGTAATGATGCAATGGGCG
GAACCGGCGTCGCCTCCTCTCACTATGGCGTGGCACCGCTGGCAAACCCGGCGCTGCTGACAAAAGCCGGTCCTGACGAT
GATTTCAGCCTTCTGCTTCCGTCCGTCGGTGCGCAACTCTCCGACCCGGATAATATCACCGACAACGCCGACCGGATCAG
TGATGACTGGAAGGCCTTCGACCGCGCCATCGACAGTAACCACGGTGTTCCTGAGGCTGCCGCACGCCTGAAAGAACGCC
TCCGGGACTTCCGTCACACACATGCCGCCGCACAGTTGGGCGTTTCTGCTGTGGCGGCCCTTCCCGGTGACCGCCTCTCT
GCCGCACTGATGGTTAAATCACACGGCACCGTCAGTGTCGACGGTAAAGTCTCTGATGCTGACCTCACTTACCTGGAAGA
GGTGGCAAACAGCACCGGACAGGAGGTGGACAAAAGCCGCCTGACATCACAGGCCTTTGCCCGCGCGGCACTGATCACTG
ATGTGGGTATTGCTCTGGCTACGGAACTGGAAACGGCCGGGCAGAAATGGTCTCTGGGCTTCACCCCCAAATTCCAGCGC
GTCGACCTGTTCAACTACAACGTGCTGGTCAGAAATTATGACAGCAGCGCCTTCAAAGGCGACCGCTACCACAACACGAA
AAATGGCATCAACGCCGACATCGGTGCCAGTACGGACCTGGATGACAACTGGACGCTGGGGCTGGTCGCACAGAACCTGA
TCCCCCGTAGTATTGAGACAAAAGAAGTGAACGGTATCACGGAAACCTTCAGGATCCGCCCGCAGGTGACGGCCGGTGTC
TCCTGGCACAACGCGATGTTCACCACCGCATTTGATGTGGATCTGACCCCGGCCAGCGGTTTCACCTCCGACAGCAACCG
TCAGTTTGCCGCCATTGGCGCAGAATTTAATGCCTGGAAATGGGCACAGCTGCGCGCCGGTTACCGTCAGAATCTGGCCG
GTAACGACGGCAGTGCATTCACGGCCGGGGTGGGGATCTCACCGTTTGATGTGGTTCACCTTGATGTTGCAGGCCTGATC
GGCACGGACAACACTTACGGTGCGGTCGCACAGTTCCAGTTCACCTTCTGA

Upstream 100 bases:

>100_bases
TGGTCACAGGAAAAATATTACCGGCTGAGTTATTCCGAATTCCCTTATCGCCCTGGTAATAACACGTTATTAAACACTGA
CTGTTTTTAATGGCACAGGC

Downstream 100 bases:

>100_bases
GTTCCACCTGCAAAACAGCATGCACATTATCGCTGCATGTTGTTTCCATCATCAAAAGTCTGTCGGACATCGACAGACTT
AACTCCCCCGGATAATACAG

Product: putative plasmid transfer protein

Products: NA

Alternate protein names: Plasmid Transfer Protein TraF; TraF Protein; Conjugative Transfer Protein; Outer Membrane Or Exported; TraF-Related Protein; IncI1 Plasmid Conjugative Transfer Protein TraF; Ribonuclease PH

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MPRLCYTRKTLIQETEMMMKKHITRTLVASAVLFSFNSAAATSYSEARNDAMGGTGVASSHYGVAPLANPALLTKAGPDD
DFSLLLPSVGAQLSDPDNITDNADRISDDWKAFDRAIDSNHGVPEAAARLKERLRDFRHTHAAAQLGVSAVAALPGDRLS
AALMVKSHGTVSVDGKVSDADLTYLEEVANSTGQEVDKSRLTSQAFARAALITDVGIALATELETAGQKWSLGFTPKFQR
VDLFNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTDLDDNWTLGLVAQNLIPRSIETKEVNGITETFRIRPQVTAGV
SWHNAMFTTAFDVDLTPASGFTSDSNRQFAAIGAEFNAWKWAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLI
GTDNTYGAVAQFQFTF

Sequences:

>Translated_416_residues
MPRLCYTRKTLIQETEMMMKKHITRTLVASAVLFSFNSAAATSYSEARNDAMGGTGVASSHYGVAPLANPALLTKAGPDD
DFSLLLPSVGAQLSDPDNITDNADRISDDWKAFDRAIDSNHGVPEAAARLKERLRDFRHTHAAAQLGVSAVAALPGDRLS
AALMVKSHGTVSVDGKVSDADLTYLEEVANSTGQEVDKSRLTSQAFARAALITDVGIALATELETAGQKWSLGFTPKFQR
VDLFNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTDLDDNWTLGLVAQNLIPRSIETKEVNGITETFRIRPQVTAGV
SWHNAMFTTAFDVDLTPASGFTSDSNRQFAAIGAEFNAWKWAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLI
GTDNTYGAVAQFQFTF
>Mature_415_residues
PRLCYTRKTLIQETEMMMKKHITRTLVASAVLFSFNSAAATSYSEARNDAMGGTGVASSHYGVAPLANPALLTKAGPDDD
FSLLLPSVGAQLSDPDNITDNADRISDDWKAFDRAIDSNHGVPEAAARLKERLRDFRHTHAAAQLGVSAVAALPGDRLSA
ALMVKSHGTVSVDGKVSDADLTYLEEVANSTGQEVDKSRLTSQAFARAALITDVGIALATELETAGQKWSLGFTPKFQRV
DLFNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTDLDDNWTLGLVAQNLIPRSIETKEVNGITETFRIRPQVTAGVS
WHNAMFTTAFDVDLTPASGFTSDSNRQFAAIGAEFNAWKWAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLIG
TDNTYGAVAQFQFTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44813; Mature: 44682

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLCYTRKTLIQETEMMMKKHITRTLVASAVLFSFNSAAATSYSEARNDAMGGTGVASS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHCCCCCCCCCCC
HYGVAPLANPALLTKAGPDDDFSLLLPSVGAQLSDPDNITDNADRISDDWKAFDRAIDSN
CCCCCCCCCCEEEECCCCCCCCEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
HGVPEAAARLKERLRDFRHTHAAAQLGVSAVAALPGDRLSAALMVKSHGTVSVDGKVSDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCCCCCC
DLTYLEEVANSTGQEVDKSRLTSQAFARAALITDVGIALATELETAGQKWSLGFTPKFQR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCE
VDLFNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTDLDDNWTLGLVAQNLIPRSIET
EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
KEVNGITETFRIRPQVTAGVSWHNAMFTTAFDVDLTPASGFTSDSNRQFAAIGAEFNAWK
HHCCCCCHHEEECCCEEECCEECCEEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCEE
WAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLIGTDNTYGAVAQFQFTF
HHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEC
>Mature Secondary Structure 
PRLCYTRKTLIQETEMMMKKHITRTLVASAVLFSFNSAAATSYSEARNDAMGGTGVASS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHCCCCCCCCCCC
HYGVAPLANPALLTKAGPDDDFSLLLPSVGAQLSDPDNITDNADRISDDWKAFDRAIDSN
CCCCCCCCCCEEEECCCCCCCCEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
HGVPEAAARLKERLRDFRHTHAAAQLGVSAVAALPGDRLSAALMVKSHGTVSVDGKVSDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCCCCCC
DLTYLEEVANSTGQEVDKSRLTSQAFARAALITDVGIALATELETAGQKWSLGFTPKFQR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCE
VDLFNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTDLDDNWTLGLVAQNLIPRSIET
EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
KEVNGITETFRIRPQVTAGVSWHNAMFTTAFDVDLTPASGFTSDSNRQFAAIGAEFNAWK
HHCCCCCHHEEECCCEEECCEECCEEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCEE
WAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLIGTDNTYGAVAQFQFTF
HHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA