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The map label for this gene is ygfI [H]

Identifier: 218691040

GI number: 218691040

Start: 3326430

End: 3327326

Strand: Reverse

Name: ygfI [H]

Synonym: ECED1_3376

Alternate gene names: 218691040

Gene position: 3327326-3326430 (Counterclockwise)

Preceding gene: 218691041

Following gene: 218691038

Centisome position: 63.87

GC content: 43.92

Gene sequence:

>897_bases
ATGGACATTTTTATTTCGAAAAAGATGCGCAATTTCATTTTATTAGCGCAAACCAATAATATTGCCCGGGCGGCAGAAAA
AATCCATATGACGGCTTCGCGATTTGGCAAAAGCATTGCCGCGCTGGAAGAACAAATTGGCTATACGCTATTTACCCGCA
AAGATAATAATATCAGCCTCAATAAAGCCGGACAGGAACTGTATCAAAAACTGTTCCCGGTTTATCAACGACTTTCTGCG
ATTGATAATGAAATCCATAACTCAGGACGTCGTTCACGAGAAATTGTGATAGGCATAGATAATACTTATCCGACAATTAT
TTTTGATCAGTTGATTAGTCTCGGAGATAAGTACGAAGGCGTGACCATCCAGCCAGTTGAGTTCAGCGAAAATGGCGTTA
TCGATAATCTTTTTGACCGTCAGTTAGATTTTATTATCTCCCCACAGCATGTATCTGCACGAGTTCAGGAACTGGAAAAC
CTGACTATCAGTGAACTACCACCGCTGCGATTGGGCTTTCACGTTTCTCGCCGTTATGAAGGGCGACAGGAGCAAGAGCT
GCTTCAGGAGCTGCCCTGGCTACAAATGCGCTTTCAAAACCGGGCTAACTTCGAAGCAATGATTGATGCGAATATGCGTC
CTTGTGGGATCAATCCAACCATTATTTATCGTCCCTATAGTTTTATGGCCAAAATCAGCGACGTGGAGCGGGGACATTTT
CTGACGGTGATCCCGCATTTTGCCTGGCGACTGGTGAATCCGGCAACGCTGAAATATTTTGATGCGCCGCACAGGCCGAT
GTATATGCAGGAATATCTTTATTCAATCAGAAATCATCGTTATACCGCCACGATGCTTCAGCATATTGCTGAAGATCGTT
ACGGGACAAACCATTAA

Upstream 100 bases:

>100_bases
TTCTGTAAAACCATGACGTAATCACCTATCTTTGCTCGCGGTTTCATCAAGGATAGGCTGACTGAAACGGTTAAGCGGAC
AAGGATGCGGGAGAGGGGGG

Downstream 100 bases:

>100_bases
CCCGGCATCGATCCGGTTGCAATTAAATTACGGTGTAAGTCGAAGACGTGGCTAAGATCGTGGTGAATATGTCCGCCGGA
CGCATTTTCCAGATAGCGAT

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MDIFISKKMRNFILLAQTNNIARAAEKIHMTASRFGKSIAALEEQIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSA
IDNEIHNSGRRSREIVIGIDNTYPTIIFDQLISLGDKYEGVTIQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN
LTISELPPLRLGFHVSRRYEGRQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISDVERGHF
LTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATMLQHIAEDRYGTNH

Sequences:

>Translated_298_residues
MDIFISKKMRNFILLAQTNNIARAAEKIHMTASRFGKSIAALEEQIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSA
IDNEIHNSGRRSREIVIGIDNTYPTIIFDQLISLGDKYEGVTIQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN
LTISELPPLRLGFHVSRRYEGRQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISDVERGHF
LTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATMLQHIAEDRYGTNH
>Mature_298_residues
MDIFISKKMRNFILLAQTNNIARAAEKIHMTASRFGKSIAALEEQIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSA
IDNEIHNSGRRSREIVIGIDNTYPTIIFDQLISLGDKYEGVTIQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN
LTISELPPLRLGFHVSRRYEGRQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISDVERGHF
LTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATMLQHIAEDRYGTNH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082184, Length=298, Percent_Identity=97.6510067114094, Blast_Score=600, Evalue=1e-173,
Organism=Escherichia coli, GI157672245, Length=252, Percent_Identity=25, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34846; Mature: 34846

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIFISKKMRNFILLAQTNNIARAAEKIHMTASRFGKSIAALEEQIGYTLFTRKDNNISL
CCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCEEH
NKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNTYPTIIFDQLISLGDKYEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC
VTIQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELENLTISELPPLRLGFHVSRRYE
EEEEEEECCCCCCHHHHHHHHHHHEECCHHHHHHHHHHHCCCHHCCCCHHCCHHHHHHCC
GRQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISDVERGHF
CCHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCHHHHHHHHHCCCCCE
LTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATMLQHIAEDRYGTNH
EEEHHHHHHHHCCCHHEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDIFISKKMRNFILLAQTNNIARAAEKIHMTASRFGKSIAALEEQIGYTLFTRKDNNISL
CCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCEEH
NKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNTYPTIIFDQLISLGDKYEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC
VTIQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELENLTISELPPLRLGFHVSRRYE
EEEEEEECCCCCCHHHHHHHHHHHEECCHHHHHHHHHHHCCCHHCCCCHHCCHHHHHHCC
GRQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISDVERGHF
CCHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCHHHHHHHHHCCCCCE
LTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATMLQHIAEDRYGTNH
EEEHHHHHHHHCCCHHEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]