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The map label for this gene is ygbI [H]

Identifier: 218690860

GI number: 218690860

Start: 3123644

End: 3124441

Strand: Reverse

Name: ygbI [H]

Synonym: ECED1_3188

Alternate gene names: 218690860

Gene position: 3124441-3123644 (Counterclockwise)

Preceding gene: 218690866

Following gene: 218690857

Centisome position: 59.98

GC content: 51.88

Gene sequence:

>798_bases
ATGTCAGCAGGACAAAGGAAGGAGCAAAAGTTGATACCCGTAGAGCGTCGCCAAATCATCCTTGAGATGGTAGCTGAAAA
AGGCATTGTTAGTATTGCTGAACTAACGGACAGAATGAATGTGTCACATATGACCATTCGTCGGGATTTACAAAAACTGG
AGCAGCAGGGAGCCGTTGTGCTGGTGTCCGGGGGCGTCCAGTCTCCGGGACGGGTGGCGCATGAACCTTCTCATCAGGTA
AAAACTGCGCTGGCAATGACGCAAAAAGCGGCTATTGGCAAGCTGGCGGCAAGTCTTGTTCAGCCGGGACGTTGTATCTA
TCTGGATGCGGGAACGACCACGTTAGCGATTGCACAGCATCTGATTCACATGGAGCCACTCACAGTGGTTACTAACGACT
TCGTTATTGCGGACTACTTGCTCGACAACAGTAATTGCACAATTATTCACACTGGCGGCGCAGTGTGTCGGGAAAACCGT
TCCTGTGTTGGGGAAGCCGCTGCGACCATGCTGCGTAGCCTGATGATTGATCAGGCTTTTATTTCTGCATCGTCATGGAG
TGTGCGGGGGATCTCTACGCCAGCAGAAGATAAAGTCACGGTGAAACGGGCGATTGCCAGTGCCAGCCGCCAGCGAGTTT
TGGTCTGTGATGCGACGAAATATGGACAGGTGGCGACATGGCTGGCGTTACCATTAAGCGAGTTTGATCAGATCATTACT
GACGATGGTCTGCCGGAGAGTGCCAGCCGCGCGCTGGCGAAGCTGGATCTCTCTTTGCTGGTAGCGAAAAATGAATAA

Upstream 100 bases:

>100_bases
CGATATGGTGAGCTGATTCACAAAAATTAACATTGTGTGTTATTTTATGTGAACTAAGCGTTAGTTGCGCCGCACACGTT
TCGCAGGCAAATAGCGTAGA

Downstream 100 bases:

>100_bases
TGACCTGCAATAACGCCGGGTTACTCATGCTTCACAGAAGAAGCATGAGACTACTTTATTTTATAAAATGACAGCCGCCC
GCTTTTCGGCGATCCGGTAT

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQV
KTALAMTQKAAIGKLAASLVQPGRCIYLDAGTTTLAIAQHLIHMEPLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENR
SCVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIIT
DDGLPESASRALAKLDLSLLVAKNE

Sequences:

>Translated_265_residues
MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQV
KTALAMTQKAAIGKLAASLVQPGRCIYLDAGTTTLAIAQHLIHMEPLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENR
SCVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIIT
DDGLPESASRALAKLDLSLLVAKNE
>Mature_264_residues
SAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVK
TALAMTQKAAIGKLAASLVQPGRCIYLDAGTTTLAIAQHLIHMEPLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENRS
CVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITD
DGLPESASRALAKLDLSLLVAKNE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=255, Percent_Identity=98.0392156862745, Blast_Score=510, Evalue=1e-146,
Organism=Escherichia coli, GI1789519, Length=246, Percent_Identity=30.8943089430894, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789059, Length=251, Percent_Identity=29.0836653386454, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789829, Length=246, Percent_Identity=30.0813008130081, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787540, Length=230, Percent_Identity=29.1304347826087, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082344, Length=234, Percent_Identity=26.4957264957265, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790635, Length=231, Percent_Identity=25.5411255411255, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790753, Length=253, Percent_Identity=26.8774703557312, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787063, Length=210, Percent_Identity=30.952380952381, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788069, Length=229, Percent_Identity=25.3275109170306, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789170, Length=238, Percent_Identity=26.0504201680672, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28597; Mature: 28466

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVV
CCCCCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE
LVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGRCIYLDAGTTTLAIAQH
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
LIHMEPLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAF
HHHCCCCEEEECCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
ISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIIT
HCCCCCEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCHHHHHHHHC
DDGLPESASRALAKLDLSLLVAKNE
CCCCCHHHHHHHHHHCEEEEEEECC
>Mature Secondary Structure 
SAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVV
CCCCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE
LVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGRCIYLDAGTTTLAIAQH
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
LIHMEPLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAF
HHHCCCCEEEECCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
ISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIIT
HCCCCCEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCHHHHHHHHC
DDGLPESASRALAKLDLSLLVAKNE
CCCCCHHHHHHHHHHCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]