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The map label for this gene is yfdZ [H]

Identifier: 218690522

GI number: 218690522

Start: 2771795

End: 2773033

Strand: Reverse

Name: yfdZ [H]

Synonym: ECED1_2826

Alternate gene names: 218690522

Gene position: 2773033-2771795 (Counterclockwise)

Preceding gene: 218690526

Following gene: 218690520

Centisome position: 53.23

GC content: 55.13

Gene sequence:

>1239_bases
ATGGCTGACACTCGCCCTGAACGTCGCTTTACGCGCATTGATCGTCTCCCGCCCTACGTTTTTAACATTACCGCTGAACT
GAAAATGGCTGCGCGTCGGCGCGGCGAAGATATTATCGATTTCAGTATGGGTAACCCGGACGGTGCGACTCCGCCGCATA
TCGTCGAAAAATTATGTACGGTGGCCCAGCGCCCGGACACGCATGGTTATTCCACTTCACGCGGCATTCCGCGGTTACGT
CGCGCCATTTCCCGCTGGTATCAGGATCGCTACGACGTTGAAATCGACCCGGAATCAGAAGCCATCGTCACTATTGGTTC
GAAAGAGGGCCTGGCGCATCTGATGCTGGCGACGCTGGATCATGGTGACACAGTGCTGGTGCCGAATCCAAGCTACCCCA
TTCATATTTACGGCGCGGTGATTGCCGGGGCGCAGGTACGCTCAGTGCCGCTGGTGGAAGGTGTCGATTTCTTCAATGAA
CTGGAGCGCGCCATTCGTGAAAGTTATCCGAAACCGAAGATGATGATCCTCGGCTTCCCGTCAAACCCAACCGCGCAATG
CGTGGAACTGGAATTCTTTGAGAAGGTTGTGGCGCTGGCGAAACGCTACGATGTGCTGGTGGTCCACGACCTGGCCTATG
CCGATATCGTCTACGATGGCTGGAAAGCGCCGTCAATCATGCAGGTGCCAGGTGCACGCGACATGGCGGTCGAGTTCTTT
ACGCTGTCGAAAAGCTACAACATGGCGGGCTGGCGTATCGGCTTTATGGTCGGTAACAAAACGCTGGTCAGCGCGTTGGC
ACGTATTAAAAGCTATCACGATTACGGCACCTTTACGCCGTTGCAGGTGGCGGCTATTGCGGCGCTGGAGGGCGATCAAC
AGTGCGTGCGCGATATTGCCGAACAGTACAAACGCCGCCGTGATGTGCTGGTGAAAGGGCTGCATGAAGCGGGCTGGATG
GTCGAAATGCCGAAGGCTTCGATGTATGTCTGGGCGAAAATCCCGGAACCGTATGCTGCCATGGGCTCGCTGGAATTTGC
CAAGAAATTGCTTAACGAAGCGAAGGTCTGTGTCTCTCCAGGGATTGGCTTTGGCGACTACGGCGATACGCATGTGCGCT
TTGCACTGATTGAAAACCGCGACCGTATTCGTCAGGCGATTCGTGGGATTAAAGCGATGTTCCGTGCCGACGGTTTACTA
CCTGCCAGCAGCAAACATATTCACGAAAACGCGGAATAA

Upstream 100 bases:

>100_bases
CGCTGGACAGACAGAAATTAATCAGGCTATTTTCAAAACAGCCACCATCGTGGCAGCGTCGCTCGGACGGTCCGGGCGCT
AACGTTAATCTGAGGAAATT

Downstream 100 bases:

>100_bases
ACACCATCGTCAGAAATGCAAACAGGAGCCAGATGGCTCCTGTTTTTCATTGCACAGTTTGCTTTTAGATCATCAGGGCA
AAAGTACCGGCCCAAACGAT

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLR
RAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDMAVEFF
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWM
VEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLL
PASSKHIHENAE

Sequences:

>Translated_412_residues
MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLR
RAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDMAVEFF
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWM
VEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLL
PASSKHIHENAE
>Mature_411_residues
ADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLRR
AISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNEL
ERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDMAVEFFT
LSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMV
EMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLLP
ASSKHIHENAE

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713254, Length=421, Percent_Identity=25.41567695962, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI56713256, Length=421, Percent_Identity=25.41567695962, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI95147551, Length=417, Percent_Identity=22.5419664268585, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI169881279, Length=417, Percent_Identity=22.5419664268585, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI169881281, Length=236, Percent_Identity=21.6101694915254, Blast_Score=73, Evalue=6e-13,
Organism=Escherichia coli, GI1788722, Length=412, Percent_Identity=99.7572815533981, Blast_Score=852, Evalue=0.0,
Organism=Escherichia coli, GI1786816, Length=337, Percent_Identity=25.2225519287834, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1788627, Length=377, Percent_Identity=26.2599469496021, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787710, Length=312, Percent_Identity=26.2820512820513, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788332, Length=255, Percent_Identity=27.0588235294118, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567369, Length=398, Percent_Identity=24.1206030150754, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI71994472, Length=367, Percent_Identity=24.5231607629428, Blast_Score=118, Evalue=7e-27,
Organism=Caenorhabditis elegans, GI71994476, Length=365, Percent_Identity=24.3835616438356, Blast_Score=118, Evalue=7e-27,
Organism=Saccharomyces cerevisiae, GI6322401, Length=393, Percent_Identity=21.1195928753181, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6320317, Length=349, Percent_Identity=24.0687679083095, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI28573069, Length=340, Percent_Identity=27.0588235294118, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24646114, Length=340, Percent_Identity=27.0588235294118, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI28573067, Length=340, Percent_Identity=27.0588235294118, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI28573065, Length=340, Percent_Identity=27.0588235294118, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24641770, Length=379, Percent_Identity=25.065963060686, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24641760, Length=379, Percent_Identity=25.065963060686, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24641768, Length=379, Percent_Identity=25.065963060686, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24641766, Length=379, Percent_Identity=25.065963060686, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24641764, Length=379, Percent_Identity=25.065963060686, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI45551451, Length=379, Percent_Identity=25.065963060686, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI18859735, Length=323, Percent_Identity=23.5294117647059, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 46249; Mature: 46118

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCT
CCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
VAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLD
HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCHHHHHHHEEC
HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP
CCCEEEECCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECC
SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDMAVEFF
CCCCHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHEECCCCCCCEEECCCCCHHEEEEE
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIA
EECCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHH
EQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSP
HHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCHHHHCCHHHHHHHHHCCCEEECC
GIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLLPASSKHIHENAE
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCT
CCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
VAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLD
HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCHHHHHHHEEC
HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP
CCCEEEECCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECC
SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDMAVEFF
CCCCHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHEECCCCCCCEEECCCCCHHEEEEE
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIA
EECCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHH
EQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSP
HHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCHHHHCCHHHHHHHHHCCCEEECC
GIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLLPASSKHIHENAE
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]