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The map label for this gene is roi [H]

Identifier: 218690243

GI number: 218690243

Start: 2480288

End: 2481016

Strand: Reverse

Name: roi [H]

Synonym: ECED1_2538

Alternate gene names: 218690243

Gene position: 2481016-2480288 (Counterclockwise)

Preceding gene: 218690244

Following gene: 218690242

Centisome position: 47.62

GC content: 47.33

Gene sequence:

>729_bases
ATGACAATGAATGAGCTGATAAATAGCAGCATCATCAAAATGACCAGCATTGAAATCGCTGAGTTGGTGGGGAGTCGTCC
AGATAACGTAAAAATATCAATAGAGCGCCTGGCTAAATCTGGAGTTATTCAACTTCCTGCATTGCAGGTTTTCGAAAAAA
TCAATAACTTAGGACTGCGCCGTAGTGTCGAGGCTTACGTCTTCGAAGGCGAACAAGGTAAGCGAGACAGCATTATTGTC
GTCGCCCAATTGTCGCCGGAATTCACCGCTCGTCTTGTTGACCGTTGGCGAGAGCTTGAAGAAACTGCGGTTAATATCCC
CAAAACGCTACCAGAAGCGTTGCGCCTTGCTGCTGATCTTGCTGAGCAGAAAATGCAACTGGAAAACCAGCTCGCAATTG
CCGCACCTAAAGTTGAGTTTGCCGATCGAGTTGGCGAGGCCAGCGGAATTTTGATTGGAAACTATGCAAAGGTTGTTGGA
ATTGGTCCAAACAAACTGTTTGCGTGGATGCGCGATCACAAAATCCTTATTGCTTCAGGTGCCCGGCGCAATGTGCCAAT
GCAGGAATATATGGAGCGCGGCTATTTCACAGTGAAAGAAACAGCGGTCAACACAAATCACGGAATACAGATATCGTTCA
CCACAAAAATCACCGGGCGTGGTCAACAGTGGCTGACCAGAAAGCTGCTCGATAACGGAATGCTGAAAGTAACAGGGGAG
GCTGCTTAA

Upstream 100 bases:

>100_bases
AAGAGTTGCCGCCTTCACTGCATCGCTACTGACAATTGACAACTTAACAAACCCAGCTTCGGCTGGGTTTTTTATTGCTG
AATTTTCAATATGAGAGGAC

Downstream 100 bases:

>100_bases
TGGCTAAACCAGCGCGAAGGAAATGCAAAATATGCAAAGAATGGTTTCACCCGGCATTCTCAAATCAGTGGTGGTGCTGC
CCGGAACACGGAACTCAATT

Product: DNA-binding protein from phage origin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTMNELINSSIIKMTSIEIAELVGSRPDNVKISIERLAKSGVIQLPALQVFEKINNLGLRRSVEAYVFEGEQGKRDSIIV
VAQLSPEFTARLVDRWRELEETAVNIPKTLPEALRLAADLAEQKMQLENQLAIAAPKVEFADRVGEASGILIGNYAKVVG
IGPNKLFAWMRDHKILIASGARRNVPMQEYMERGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGE
AA

Sequences:

>Translated_242_residues
MTMNELINSSIIKMTSIEIAELVGSRPDNVKISIERLAKSGVIQLPALQVFEKINNLGLRRSVEAYVFEGEQGKRDSIIV
VAQLSPEFTARLVDRWRELEETAVNIPKTLPEALRLAADLAEQKMQLENQLAIAAPKVEFADRVGEASGILIGNYAKVVG
IGPNKLFAWMRDHKILIASGARRNVPMQEYMERGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGE
AA
>Mature_241_residues
TMNELINSSIIKMTSIEIAELVGSRPDNVKISIERLAKSGVIQLPALQVFEKINNLGLRRSVEAYVFEGEQGKRDSIIVV
AQLSPEFTARLVDRWRELEETAVNIPKTLPEALRLAADLAEQKMQLENQLAIAAPKVEFADRVGEASGILIGNYAKVVGI
GPNKLFAWMRDHKILIASGARRNVPMQEYMERGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGEA
A

Specific function: Unknown

COG id: COG3645

COG function: function code S; Uncharacterized phage-encoded protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005039
- InterPro:   IPR014054
- InterPro:   IPR019104 [H]

Pfam domain/function: PF03374 ANT; PF09669 Phage_pRha [H]

EC number: NA

Molecular weight: Translated: 26920; Mature: 26788

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMNELINSSIIKMTSIEIAELVGSRPDNVKISIERLAKSGVIQLPALQVFEKINNLGLR
CCHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHCCCEECHHHHHHHHHHCCCCC
RSVEAYVFEGEQGKRDSIIVVAQLSPEFTARLVDRWRELEETAVNIPKTLPEALRLAADL
CCCEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AEQKMQLENQLAIAAPKVEFADRVGEASGILIGNYAKVVGIGPNKLFAWMRDHKILIASG
HHHHHHHHCCEEEECCCHHHHHHCCCCCCEEEECCEEEEEECHHHHHHHHCCCEEEEECC
ARRNVPMQEYMERGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGE
CCCCCCHHHHHHCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEECC
AA
CC
>Mature Secondary Structure 
TMNELINSSIIKMTSIEIAELVGSRPDNVKISIERLAKSGVIQLPALQVFEKINNLGLR
CHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHCCCEECHHHHHHHHHHCCCCC
RSVEAYVFEGEQGKRDSIIVVAQLSPEFTARLVDRWRELEETAVNIPKTLPEALRLAADL
CCCEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AEQKMQLENQLAIAAPKVEFADRVGEASGILIGNYAKVVGIGPNKLFAWMRDHKILIASG
HHHHHHHHCCEEEECCCHHHHHHCCCCCCEEEECCEEEEEECHHHHHHHHCCCEEEEECC
ARRNVPMQEYMERGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGE
CCCCCCHHHHHHCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEECC
AA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]