Click here to switch to the map view.

The map label for this gene is ymfN [C]

Identifier: 218689462

GI number: 218689462

Start: 1691233

End: 1692894

Strand: Reverse

Name: ymfN [C]

Synonym: ECED1_1705

Alternate gene names: 218689462

Gene position: 1692894-1691233 (Counterclockwise)

Preceding gene: 218689463

Following gene: 218689461

Centisome position: 32.5

GC content: 58.06

Gene sequence:

>1662_bases
ATGATACCAGGGTGGAGCACGGCCTGCCCGGACTGGGCAGTACGCCTGAAAAAGGGGCTGTCGATTATTCCGGCTCCGAT
TTATCCGGAGCAGGCCGCACATGCCCTGGCGATTTTTAAACAACTGCGGATTGTGGATGCACCGGGCAGCCCGACGTTCG
GGGAGTCCTGTGCACAGTGGGTGTTTGACCTGGTGGCGGCCCTGTTTGGCTCCTACGATGCGCAGACCGGTGTGCGCCAT
ATCAAGGAAGTGTTCATTCTGATACCTAAAAAAAACAGCAAGTCCACGCTGGCCGCCGGGATCATGATGACGGCGCTGTT
ACTGAACTGGCGGCAGGCGGCGGGCTACACCATTCTGGCCCCGACCGTGGAGGTGGCAGCCAACGCCTTCAACCCTGCCC
GGGATATGGTACGACGCGACGATGATCTGGATGACCTCTGCCAGGTACAGACGCATATCCGGACCATCACCCACCGGGTG
ACGGACACCACCCTGAAGGTGGTGGCAGCCGATCCGAATACGGTGTCCGGTATCAAGTCCGTGGGTACGCTGATTGATGA
GTTATGGCTGTTTGGCAAACAGTACAAGGCGGAGGACATGTTACGTGAAGCCATAGGCGGCCTTGCCTCCCGCCCGGAAG
GGTTTGTGGTGTATACGACCACCCAGTCGAATGAGCCGCCTGCCGGGGTGTTCAGGCAGAAACTGCAGTACGCCCGGGAT
GTGCGTGACGGCAAAATTCATGATCCGCACTTTCTGCCGGTGATTTTTGAGCATCCGCCGGAGATGGTGGAGAGCGGTGA
GCACCTGCTGATGGAAAACCTCGCCATGGTCAATCCGAATCTCGGTTATTCGGTGGATGAGGCGTTTCTGTACCGGGAGT
ACCGTAAAGCCCGGGAAGCCGGTGAAGAGACTTTTCGCGGTTTCATGTCAAAACACGCCAATGTGGAAATTGGTCTTGCC
CTGCGTTCTGACCGCTGGGCGGGGGCGGATTTCTGGGAGCAGCAGGGCAGGCGCATCAGTCTGGACGATATTCTGCAGCG
TGCTGATGTGGTGACGGTGGGGATTGACGGCGGAGGGCTGGATGATCTGCTGGGGATGTATGTGATTGGGCGTGACCGGG
AGACCCGCGAATGGCTGGGCTGGGGCCATGCCTGGGCACATGAAACCGCGGTGGCCAGACGAAAAAGTGAGGCAGCCCGT
TTTCAGGATTTTGTTGCCTGTGGGGATATGACCATTGTCCGTCGGGTCGGGGATGACACGGCGGAAGTGGCGGAGTATGT
GCGTCGCATTCATGAGGCTGAGTTACTGGACCATATCGGTATTGACCCGTCAGGCGTGGGGCAGATTCTGGATTCACTGG
CGGAAGCCGGGATCCCCGATGAGAGTGTGGTGGGGATAAGCCAGGGCTGGAAGCTGGGCGGGGCCATAAAAACCACCGAG
CGCAAACTGGCTGAGGGAGTACTGGTGCATGGTGGTCAGCCACTGATGGCCTGGTGCGTTGGCAATGCCCGGGTGGAGCC
TAAAGGTAACGCTATCCTTATTACCAAACAGGCCAGCGGGCGGGGGAAAATTGACCCGCTGATGGCGCTCTTCAATGCGG
TATCCCTGATGTCCCTGAATCCGGAGCCGAAAAAGAAAGAATATGCGGTTTTTTTCATATAA

Upstream 100 bases:

>100_bases
AAAAATCGGCAAAAGGTGACGCGGCGAAAAAAGCGGCTAACCGTTTTGCGGTGCCACCACCACCCCGCCTGGTGGTGAAT
AACGATAATGAGGGCAACGG

Downstream 100 bases:

>100_bases
CCCTGTTCACCCTGTAACCATCATGGACCGCTGCGGCGGTTTTTTTATTTTCAGGAGGCTGATGTGACTCTTAAACGGGC
CTGCTCCCTGCTGACGGTGA

Product: putative large subunit terminase in prophage

Products: NA

Alternate protein names: Phage Terminase; Phage Terminase Large Subunit; Terminase Large Subunit; Phage Terminase-Like Protein Large Subunit; Phage-Terminase Large Subunit; Phage Terminase Family Protein

Number of amino acids: Translated: 553; Mature: 553

Protein sequence:

>553_residues
MIPGWSTACPDWAVRLKKGLSIIPAPIYPEQAAHALAIFKQLRIVDAPGSPTFGESCAQWVFDLVAALFGSYDAQTGVRH
IKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRV
TDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARD
VRDGKIHDPHFLPVIFEHPPEMVESGEHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGFMSKHANVEIGLA
LRSDRWAGADFWEQQGRRISLDDILQRADVVTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVARRKSEAAR
FQDFVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDESVVGISQGWKLGGAIKTTE
RKLAEGVLVHGGQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSLMSLNPEPKKKEYAVFFI

Sequences:

>Translated_553_residues
MIPGWSTACPDWAVRLKKGLSIIPAPIYPEQAAHALAIFKQLRIVDAPGSPTFGESCAQWVFDLVAALFGSYDAQTGVRH
IKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRV
TDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARD
VRDGKIHDPHFLPVIFEHPPEMVESGEHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGFMSKHANVEIGLA
LRSDRWAGADFWEQQGRRISLDDILQRADVVTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVARRKSEAAR
FQDFVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDESVVGISQGWKLGGAIKTTE
RKLAEGVLVHGGQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSLMSLNPEPKKKEYAVFFI
>Mature_553_residues
MIPGWSTACPDWAVRLKKGLSIIPAPIYPEQAAHALAIFKQLRIVDAPGSPTFGESCAQWVFDLVAALFGSYDAQTGVRH
IKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRV
TDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARD
VRDGKIHDPHFLPVIFEHPPEMVESGEHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGFMSKHANVEIGLA
LRSDRWAGADFWEQQGRRISLDDILQRADVVTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVARRKSEAAR
FQDFVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDESVVGISQGWKLGGAIKTTE
RKLAEGVLVHGGQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSLMSLNPEPKKKEYAVFFI

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61009; Mature: 61009

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPGWSTACPDWAVRLKKGLSIIPAPIYPEQAAHALAIFKQLRIVDAPGSPTFGESCAQW
CCCCCCCCCCHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHH
VFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILA
HHHHHHHHHCCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
PTVEVAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKS
CHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH
VGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARD
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
VRDGKIHDPHFLPVIFEHPPEMVESGEHLLMENLAMVNPNLGYSVDEAFLYREYRKAREA
CCCCCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
GEETFRGFMSKHANVEIGLALRSDRWAGADFWEQQGRRISLDDILQRADVVTVGIDGGGL
HHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHCCCEECHHHHHHHCCEEEEEECCCCH
DDLLGMYVIGRDRETREWLGWGHAWAHETAVARRKSEAARFQDFVACGDMTIVRRVGDDT
HHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCH
AEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDESVVGISQGWKLGGAIKTTE
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHH
RKLAEGVLVHGGQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSLMSLN
HHHHCCCEEECCCCEEEEEECCCEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCC
PEPKKKEYAVFFI
CCCCCCCEEEEEC
>Mature Secondary Structure
MIPGWSTACPDWAVRLKKGLSIIPAPIYPEQAAHALAIFKQLRIVDAPGSPTFGESCAQW
CCCCCCCCCCHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHH
VFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILA
HHHHHHHHHCCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
PTVEVAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKS
CHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH
VGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARD
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
VRDGKIHDPHFLPVIFEHPPEMVESGEHLLMENLAMVNPNLGYSVDEAFLYREYRKAREA
CCCCCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
GEETFRGFMSKHANVEIGLALRSDRWAGADFWEQQGRRISLDDILQRADVVTVGIDGGGL
HHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHCCCEECHHHHHHHCCEEEEEECCCCH
DDLLGMYVIGRDRETREWLGWGHAWAHETAVARRKSEAARFQDFVACGDMTIVRRVGDDT
HHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCH
AEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDESVVGISQGWKLGGAIKTTE
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHH
RKLAEGVLVHGGQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSLMSLN
HHHHCCCEEECCCCEEEEEECCCEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCC
PEPKKKEYAVFFI
CCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA