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The map label for this gene is ydeT [H]

Identifier: 218689411

GI number: 218689411

Start: 1634039

End: 1634887

Strand: Reverse

Name: ydeT [H]

Synonym: ECED1_1647

Alternate gene names: 218689411

Gene position: 1634887-1634039 (Counterclockwise)

Preceding gene: 218689412

Following gene: 218689410

Centisome position: 31.38

GC content: 44.76

Gene sequence:

>849_bases
GTGCCGTTTGGTGATATTACGACTTCGCTGAATTACAGCTATTCCAATAATATATGGCAAAACGATCGGGATCATTTACT
CGCTTTTACGCTTAATGTTCCCTTTAGTCATTGGATGCGTACATATGGCACTCTGCTGCCGGATAATAACCTGAATTATA
GCGTTCAGGTCGGTAACACCCAAGGGGGTAATACATCGTCTGGCACCAGTGGTTACAGTTCTCTTAATTATCGTGGAGCT
TACGCTAATACGAATGTCGGTTACAGTCGGAGTGGTGACAGCAGCCAGATTTATTACGGAATGAGTGGTGGGATTATTGC
TCATGCTGATGGCATCACCTTTGGACAGCCGCTGGGCGACACAATGGTTCTGGTTAAGGCTACTGGCGCTGATAATGTCA
AAATAGAGAACCAGACCGGAATTCATACCGACTGGCGTGGCTATGCCATATTACCATTTGCGACAGAATATAGAGAAAAT
CGTGTCGCTCTTAACGCGAATTCCCTTGCAGATAATGTTGAACTGGATGAAACCGTAGTCACTGTCATCCCAACTCACGG
TGCTATTGCCAGAGCAACATTTAATGCACAAATCGGCGGGAAAGTATTAATGACGTTGAAGTACGGTAATAAAAGCGTTC
CATTCGGTGCAATTGTCACTCACGGAGAGAATAAAAATGGCAGCATTGTCGCGGAAAATGGTCAGGTTTATCTGACTGGA
CTTCCACAGTCAGGGAAATTACAGGTTTCATGGGGCAATGATAAAAACTCAAACTGTATTGTCGATTACAAGCTTCCTGT
AGTCTCTCCTGGAACCTTGCTGAACCAGCAGACAGCAATCTGTCGCTAA

Upstream 100 bases:

>100_bases
TCTATCTCATTCAGATTACGGTACGACATTTTTCAGTGCCAGTCGCCAAAGTTACTGGAACACGTCACGCAGCGACCAGC
AAATATCATTTGGATTAAAT

Downstream 100 bases:

>100_bases
GGAACGATAGTCGTAATGTCACCGTGAATCTCCCGGACTTTCCTGGAAGCGCAGAAATACCCCTTAGTGTATATTGCTCT
AGCGAACAAAAGCTCTCATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTYGTLLPDNNLNYSVQVGNTQGGNTSSGTSGYSSLNYRGA
YANTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKATGADNVKIENQTGIHTDWRGYAILPFATEYREN
RVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTG
LPQSGKLQVSWGNDKNSNCIVDYKLPVVSPGTLLNQQTAICR

Sequences:

>Translated_282_residues
MPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTYGTLLPDNNLNYSVQVGNTQGGNTSSGTSGYSSLNYRGA
YANTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKATGADNVKIENQTGIHTDWRGYAILPFATEYREN
RVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTG
LPQSGKLQVSWGNDKNSNCIVDYKLPVVSPGTLLNQQTAICR
>Mature_281_residues
PFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTYGTLLPDNNLNYSVQVGNTQGGNTSSGTSGYSSLNYRGAY
ANTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKATGADNVKIENQTGIHTDWRGYAILPFATEYRENR
VALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGL
PQSGKLQVSWGNDKNSNCIVDYKLPVVSPGTLLNQQTAICR

Specific function: Unknown

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790772, Length=309, Percent_Identity=53.7216828478964, Blast_Score=350, Evalue=5e-98,
Organism=Escherichia coli, GI1787172, Length=313, Percent_Identity=37.6996805111821, Blast_Score=215, Evalue=3e-57,
Organism=Escherichia coli, GI1786744, Length=239, Percent_Identity=43.9330543933054, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI1789533, Length=296, Percent_Identity=37.1621621621622, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1786332, Length=203, Percent_Identity=27.5862068965517, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789610, Length=290, Percent_Identity=24.4827586206897, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788427, Length=197, Percent_Identity=25.3807106598985, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 30432; Mature: 30301

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTYGTLLPDNNLNYSVQVGNT
CCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHCCCCCCCCCEEEEEECCC
QGGNTSSGTSGYSSLNYRGAYANTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGD
CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCC
TMVLVKATGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVV
EEEEEEECCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCEECCEEE
TVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTG
EEEECCCEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCEEEECCEEEEEE
LPQSGKLQVSWGNDKNSNCIVDYKLPVVSPGTLLNQQTAICR
CCCCCEEEEEECCCCCCCEEEEEECCEECCCCCCCCCHHCCC
>Mature Secondary Structure 
PFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTYGTLLPDNNLNYSVQVGNT
CCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHCCCCCCCCCEEEEEECCC
QGGNTSSGTSGYSSLNYRGAYANTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGD
CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCC
TMVLVKATGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVV
EEEEEEECCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCEECCEEE
TVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTG
EEEECCCEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCEEEECCEEEEEE
LPQSGKLQVSWGNDKNSNCIVDYKLPVVSPGTLLNQQTAICR
CCCCCEEEEEECCCCCCCEEEEEECCEECCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]